ggKbase home page

PLM3-1_170_b2_sep16_scaffold_835

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_835_1
unknown

Not on your lists

280..1275
DNA (996bp) protein (332aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_835_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1272..2312
DNA (1041bp) protein (347aa)
3-dehydroquinate synthase Tax=Synechococcus sp. RS9917 RepID=A3Z6Z3_9SYNE bin=16ft_combo_ws3_JS1 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
3-dehydroquinate synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_3
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

2389..3228
DNA (840bp) protein (280aa)
Tetratricopeptide domain protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tpr domain-containing protein
Tax=CG_Nitrosp_02
PLM3-1_170_b2_sep16_scaffold_835_4
CG_Mariprof_04, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3228..3689
DNA (462bp) protein (154aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
3-dehydroquinate dehydratase (EC:4.2.1.10)
Tax=CG_Mariprof_04
PLM3-1_170_b2_sep16_scaffold_835_5
CG_Omnitr_03, Omnitrophica, Bacteria

Not on your lists

3686..4138
DNA (453bp) protein (151aa)
Putative uncharacterized protein (Fragment) Tax=Heliobacillus mobilis RepID=Q8GDZ3_HELMO
oadA; pyruvate carboxylase subunit B
Tax=CG_Omnitr_03
PLM3-1_170_b2_sep16_scaffold_835_6
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

4155..5273
DNA (1119bp) protein (373aa)
twitching motility protein, PilT-like; K02669 twitching motility protein PilT bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
twitching motility protein PilT
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3-1_170_b2_sep16_scaffold_835_7
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5279..6637
DNA (1359bp) protein (453aa)
Biotin carboxylase Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24UY7_DESHY
acetyl-CoA carboxylase, biotin carboxylase
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EHL07569.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
PLM3-1_170_b2_sep16_scaffold_835_8
RLO_PLX_64_10, Bacteria

Not on your lists

6669..7397
DNA (729bp) protein (243aa)
2-phosphosulfolactate phosphatase; K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71] bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
2-phosphosulfolactate phosphatase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_835_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7434..8495)
DNA (1062bp) protein (354aa)
putative permease bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8513..9916)
DNA (1404bp) protein (468aa)
Permease YjgP/YjgQ family protein Tax=Rhodothermus marinus RepID=D0MDF4_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
YjgP/YjgQ family permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10123..16095
DNA (5973bp) protein (1991aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XYL8_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_12
candidate division Zixibacteria, Bacteria

Not on your lists

16067..17020
DNA (954bp) protein (318aa)
glutamine cyclotransferase Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B4BCC0
Peptidase M28 {ECO:0000313|EMBL:EQB62857.1}; species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
peptidase M28
PLM3-1_170_b2_sep16_scaffold_835_13
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17144..17644
DNA (501bp) protein (167aa)
Ribosome maturation factor RimP bin=GWB2_Deltaproteobacteria_65_81 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=CG_Delta_02
PLM3-1_170_b2_sep16_scaffold_835_14
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

17641..19047
DNA (1407bp) protein (469aa)
Transcription termination protein NusA Tax=Lutibaculum baratangense AMV1 RepID=V4RRW2_9RHIZ
nusA; transcription elongation factor NusA
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3-1_170_b2_sep16_scaffold_835_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19040..21229
DNA (2190bp) protein (730aa)
Translation initiation factor IF-2 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AH94_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
translation initiation factor 2 InfB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

21231..21512
DNA (282bp) protein (94aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_835_17
unknown

Not on your lists

21529..21729
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_835_18
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21864..22850
DNA (987bp) protein (329aa)
Exopolyphosphatase Tax=Brevibacillus panacihumi W25 RepID=V6MAX7_9BACL
Exopolyphosphatase {ECO:0000313|EMBL:EST52513.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
phosphoesterase RecJ-like protein
PLM3-1_170_b2_sep16_scaffold_835_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

22822..23754
DNA (933bp) protein (311aa)
tRNA pseudouridine synthase B Tax=Firmicutes bacterium CAG:103 RepID=R5AT73_9FIRM
tRNA pseudouridine synthase B
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b2_sep16_scaffold_835_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

23751..24689
DNA (939bp) protein (313aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Riboflavin biosynthesis protein RibF Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NIC6_ROSCS
riboflavin biosynthesis protein RibF
PLM3-1_170_b2_sep16_scaffold_835_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


24763..25032
DNA (270bp) protein (90aa)
30S ribosomal protein S15 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RS15_PELCD bin=16ft_combo_ws3_JS1 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
30S ribosomal protein S15
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25167..27338
DNA (2172bp) protein (724aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8P8G3_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_835_23
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27514..28473
DNA (960bp) protein (320aa)
Putative Zn-dependent peptidase Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KL98_9FIRM
Zinc protease {ECO:0000313|EMBL:KJS11177.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
putative Zn-dependent peptidase
Displaying 23 items

View Taxonomy