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PLM3-1_170_b2_sep16_scaffold_1149

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1149_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1..525)
DNA (525bp) protein (175aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QLY7_DESB2 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(522..1022)
DNA (501bp) protein (167aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_3
CG_CPR02_01, CG_CPR02, Bacteria

Not on your lists

1121..1537
DNA (417bp) protein (139aa)
Ribonuclease HI Tax=uncultured bacterium RepID=K1YT62_9BACT
ribonuclease H
Tax=CG_CPR02_01
PLM3-1_170_b2_sep16_scaffold_1149_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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1974..2876
DNA (903bp) protein (301aa)
Beta-lactamase domain protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJL8_RHOM4
beta-lactamase domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b2_sep16_scaffold_1149_5
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2959..3369
DNA (411bp) protein (137aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3)
NADH-quinone oxidoreductase subunit A Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKF1_9BACT
Tax=RBG_13_Deltaproteobacteria_51_10_curated
PLM3-1_170_b2_sep16_scaffold_1149_6
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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3360..3890
DNA (531bp) protein (177aa)
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
NADH-quinone oxidoreductase subunit C Tax=Roseiflexus sp. (strain RS-1) RepID=NUOC_ROSS1
PLM3-1_170_b2_sep16_scaffold_1149_7

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3894..4358
DNA (465bp) protein (155aa)
NADH dehydrogenase I subunit E Tax=uncultured prokaryote RepID=H5SP85_9ZZZZ
NADH dehydrogenase I subunit E {ECO:0000313|EMBL:BAL57977.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
nuoE; NADH dehydrogenase I subunit E
PLM3-1_170_b2_sep16_scaffold_1149_8
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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4363..5349
DNA (987bp) protein (329aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350, ECO:0000313|EMBL:GAN32545.1}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5)
NADH-quinone oxidoreductase subunit H bin=GWC2_Planctomycete_KSU_39_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
PLM3-1_170_b2_sep16_scaffold_1149_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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5359..5871
DNA (513bp) protein (171aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CT5_SOLUE
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b2_sep16_scaffold_1149_10
CSP1_5_NC10, NC10, Bacteria

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5868..6185
DNA (318bp) protein (106aa)
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5)
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_1149_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6192..8138
DNA (1947bp) protein (649aa)
Strongly similar to NAD(P)H:quinone oxidoreductase chain 5 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWH4_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
proton-translocating NADH-quinone oxidoreductase, chain L
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_12
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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8135..9709
DNA (1575bp) protein (525aa)
NADH dehydrogenase subunit M (EC:1.6.5.3) bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
nuoM; NADH-quinone oxidoreductase subunit M (NADH dehydrogenase I, chain M) (NDH-1, chain M) (EC:1.6.99.5 1.6.5.3)
Tax=CG_Syntroph_02
PLM3-1_170_b2_sep16_scaffold_1149_13
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9706..11166
DNA (1461bp) protein (487aa)
proton-translocating NADH-quinone oxidoreductase subunit N (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N bin=GWB2_Geobacter-like_52_12 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
Tax=CG_Desulfob_01
PLM3-1_170_b2_sep16_scaffold_1149_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11189..12388)
DNA (1200bp) protein (400aa)
Aminotransferase class I and II Tax=Caldithrix abyssi DSM 13497 RepID=H1XU37_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aspartate aminotransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_15
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

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comp(12385..13284)
DNA (900bp) protein (300aa)
celM; putative aminopeptidase (EC:3.4.11.-)
Cellulase Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LUV6_TEPAE
Tax=RBG_13_Spirochaetes_68_11_curated
PLM3-1_170_b2_sep16_scaffold_1149_16
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13404..14396)
DNA (993bp) protein (331aa)
cellulase (EC:3.2.1.4)
Peptidase family protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q2Z1_9FIRM
Peptidase family protein {ECO:0000313|EMBL:EKP95424.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
PLM3-1_170_b2_sep16_scaffold_1149_17
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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comp(14393..15472)
DNA (1080bp) protein (360aa)
peptidase family protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
peptidase M42 family protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3-1_170_b2_sep16_scaffold_1149_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15550..16557
DNA (1008bp) protein (336aa)
Putative uncharacterized protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67PP2_SYMTH bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
group 1 glycosyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_19
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16538..16894
DNA (357bp) protein (119aa)
Divalent ion tolerance protein, CutA1 Tax=mine drainage metagenome RepID=T0ZIZ3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KFN49197.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
CutA1 divalent ion tolerance protein
PLM3-1_170_b2_sep16_scaffold_1149_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17041..18570
DNA (1530bp) protein (510aa)
Amidohydrolase 3 Tax=Chloroflexus RepID=A9WIT1_CHLAA bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
amidohydrolase 3
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1149_21
RLO_RIF05_58_11, RIF5, Bacteria

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18711..21182
DNA (2472bp) protein (824aa)
WD40 domain protein beta propeller bin=GWC2_Ignavibacteria_56_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
WD40-like beta propeller containing protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
Displaying 21 items

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