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PLM3-1_170_b2_sep16_scaffold_1251

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1251_1
unknown

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comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1251_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(81..1196)
DNA (1116bp) protein (372aa)
putative glycosyltransferase (EC:2.4.-.-) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glycosyl transferase group 1
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1251_3
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(1193..1984)
DNA (792bp) protein (264aa)
Methyltransferase type 11 bin=GWC2_Ignavibacteria_56_12 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
UbiE/COQ5 family methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3-1_170_b2_sep16_scaffold_1251_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1992..2717)
DNA (726bp) protein (242aa)
phosphatase family protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
bis(5'-nucleosyl)-tetraphosphatase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1251_5
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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comp(2714..3130)
DNA (417bp) protein (139aa)
N utilization substance protein B homolog Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AC99_THEID
NusB antitermination factor
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
PLM3-1_170_b2_sep16_scaffold_1251_6
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3127..3699)
DNA (573bp) protein (191aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WUZ0_ALIAD
PLM3-1_170_b2_sep16_scaffold_1251_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(3696..4976)
DNA (1281bp) protein (427aa)
Riboflavin biosynthesis protein RibBA Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MD25_RHOM4
3,4-dihydroxy-2-butanone 4-phosphate synthase
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM3-1_170_b2_sep16_scaffold_1251_8
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4973..5611)
DNA (639bp) protein (213aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LW48_HALO1
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KGM15818.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
PLM3-1_170_b2_sep16_scaffold_1251_9
RLO_PLX_64_10, Bacteria

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comp(5604..6863)
DNA (1260bp) protein (420aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJ49_THEM7
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_1251_10
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

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comp(7012..9831)
DNA (2820bp) protein (940aa)
Propetide peptidase C25 Tax=Caldithrix abyssi DSM 13497 RepID=H1XTJ7_9BACT
Gingipain R
Tax=RBG_16_RIF05_58_8_curated
PLM3-1_170_b2_sep16_scaffold_1251_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9855..10907)
DNA (1053bp) protein (351aa)
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9GN91_9PROT
PEP-CTERM system TPR-repeat lipoprotein {ECO:0000313|EMBL:GAO26564.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1251_12
CG_Elusi_02, Elusimicrobia, Bacteria

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comp(10904..11593)
DNA (690bp) protein (230aa)
Uncharacterized protein bin=GWC2_OP3-like_45_7 species=Bacillus coagulans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
DNA repair protein RadC
Tax=CG_Elusi_02
PLM3-1_170_b2_sep16_scaffold_1251_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(11694..13496)
DNA (1803bp) protein (601aa)
hypothetical protein Tax=Desulfovibrio oxyclinae RepID=UPI000369E18D
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 13 items

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