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PLM3-1_170_b2_sep16_scaffold_1368

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1368_1
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1146
DNA (1146bp) protein (382aa)
Methylmalonyl-CoA mutase Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U7G5_OCEP5
methylmalonyl-CoA mutase
Tax=CG_Delta_07
PLM3-1_170_b2_sep16_scaffold_1368_2
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

1228..2064
DNA (837bp) protein (279aa)
uppP; undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
Undecaprenyl-diphosphatase Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IED0_PHYMF
PLM3-1_170_b2_sep16_scaffold_1368_3
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2061..2474
DNA (414bp) protein (138aa)
Methylmalonyl-CoA epimerase Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5ECF9_GEOBB
mceE; methylmalonyl-CoA epimerase
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ACH37587.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
PLM3-1_170_b2_sep16_scaffold_1368_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2459..3940
DNA (1482bp) protein (494aa)
exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AIC16345.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1368_5
unknown

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comp(3955..4599)
DNA (645bp) protein (215aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1368_6
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4693..5799)
DNA (1107bp) protein (369aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=CG_Delta_01
PLM3-1_170_b2_sep16_scaffold_1368_7
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5789..6955)
DNA (1167bp) protein (389aa)
Acyl-coa dehydrogenase Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAL3_HELMI
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66672.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
acyl-CoA dehydrogenase
PLM3-1_170_b2_sep16_scaffold_1368_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6973..7845)
DNA (873bp) protein (291aa)
3-hydroxybutyryl-CoA dehydrogenase Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG94_RHOM4
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:AHG90539.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3-1_170_b2_sep16_scaffold_1368_9
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(7842..9026)
DNA (1185bp) protein (395aa)
Acetyl-CoA C-acetyltransferase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
acetyl-CoA acetyltransferase
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM3-1_170_b2_sep16_scaffold_1368_10
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9063..10262)
DNA (1200bp) protein (400aa)
Acyl-CoA dehydrogenase, short-chain specific Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67P37_SYMTH
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase, short-chain specific {ECO:0000313|EMBL:BAD40556.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
PLM3-1_170_b2_sep16_scaffold_1368_11
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10279..10425)
DNA (147bp) protein (49aa)
scoB; 3-oxoacid CoA-transferase subunit B (EC:2.8.3.5)
succinyl-CoA:3-ketoacid-CoA transferase Tax=Brevibacterium massiliense RepID=UPI0002DA4517
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:KGO95381.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
PLM3-1_170_b2_sep16_scaffold_1368_12
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(10752..11468)
DNA (717bp) protein (239aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
3-oxoacid CoA-transferase subunit A
Tax=RBG_16_Zixibacteria_48_11_curated
PLM3-1_170_b2_sep16_scaffold_1368_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11485..11907)
DNA (423bp) protein (141aa)
Putative isobutyryl-CoA mutase small subunit Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A940_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative isobutyryl-CoA mutase small subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1368_14
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11926..13617)
DNA (1692bp) protein (564aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
methylmalonyl-CoA mutase (EC:5.4.99.2)
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM3-1_170_b2_sep16_scaffold_1368_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(13598..14554)
DNA (957bp) protein (319aa)
Putative transport system kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A942_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
LAO/AO transport system ATPase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b2_sep16_scaffold_1368_16
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14584..15021)
DNA (438bp) protein (146aa)
cob(I)alamin adenosyltransferase (EC:2.5.1.17)
Cob(I)alamin adenosyltransferase Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CNE1_SYNLT
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM3-1_170_b2_sep16_scaffold_1368_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15021..16247)
DNA (1227bp) protein (409aa)
monogalactosyldiacylglycerol synthase (EC:2.4.1.46)
Monogalactosyldiacylglycerol synthase Tax=Desulfotomaculum RepID=F6B637_DESCC bin=16ft_combo_ws3_JS1 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1368_18
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16204..16584)
DNA (381bp) protein (127aa)
UPF0102 protein PM8797T_28449 Tax=Planctomyces maris DSM 8797 RepID=A6BZ41_9PLAN
UPF0102 protein PM8797T_28449 {ECO:0000256|HAMAP-Rule:MF_00048}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1368_19
RLO_PLX_64_10, Bacteria

Not on your lists

comp(16599..17237)
DNA (639bp) protein (213aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
hypothetical protein Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B6B4F0
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_1368_20
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(17227..17589)
DNA (363bp) protein (121aa)
50S ribosomal protein L19 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RL19_THEYD
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
PLM3-1_170_b2_sep16_scaffold_1368_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17586..18329)
DNA (744bp) protein (248aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000255|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
tRNA (guanine-N(1)-)-methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=TRMD_GEOUR
PLM3-1_170_b2_sep16_scaffold_1368_22
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(18336..18797)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimM Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I983_CALAS
rimM; ribosome maturation factor RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b2_sep16_scaffold_1368_23
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(18862..19092)
DNA (231bp) protein (77aa)
UPF0109 protein IALB_0776 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
KH domain RNA-binding protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_1368_24
Helcococcus kunzii, Helcococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19104..19577)
DNA (474bp) protein (158aa)
30S ribosomal protein S16 Tax=Fructobacillus fructosus RepID=UPI0002195A02
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Helcococcus.;" source="Helcococcus kunzii ATCC 51366.;"
rpsP; SSU ribosomal protein S16P
PLM3-1_170_b2_sep16_scaffold_1368_25
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists


comp(19623..20942)
DNA (1320bp) protein (440aa)
Signal recognition particle protein bin=GWC2_Ignavibacteria_56_12 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3-1_170_b2_sep16_scaffold_1368_26
unknown

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21344..21724
DNA (381bp) protein (127aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1368_27
unknown

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21901..22323
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1368_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(22293..25079)
DNA (2787bp) protein (929aa)
UvrABC system protein A Tax=Thermaerobacter RepID=E6SM04_THEM7 bin=16ft_combo_ws3_JS1 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
excinuclease ABC subunit A
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1368_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25157..27133)
DNA (1977bp) protein (659aa)
alias=16ft_combo_ws3_scaffold_443_9 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1368_30
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27447..27776)
DNA (330bp) protein (110aa)
Response regulator Tax=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) RepID=Q9WYN0_THEMA
response regulator
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_38_11_curated
Displaying items 1-30 of 72 in total

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