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PLM3-1_170_b2_sep16_scaffold_1555

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1555_1
RLO_PLX_64_10, Bacteria

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796..3255
DNA (2460bp) protein (820aa)
Endonuclease MutS2 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGQ6_RHOMR
MutS2 protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_1555_2
R_NC10_66_22, NC10, Bacteria

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3263..5113
DNA (1851bp) protein (617aa)
DNA primase Tax=Rhodothermus marinus RepID=D0MHB3_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA primase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1555_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5153..6898
DNA (1746bp) protein (582aa)
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
rpoD; RNA polymerase sigma factor RpoD
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1555_trna_1
unknown

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6980..7053
DNA (74bp)
transferRNA Met
PLM3-1_170_b2_sep16_scaffold_1555_trna_2
unknown

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7121..7193
DNA (73bp)
transferRNA Val
PLM3-1_170_b2_sep16_scaffold_1555_4
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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7309..8025
DNA (717bp) protein (239aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
PLM3-1_170_b2_sep16_scaffold_1555_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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8155..9870
DNA (1716bp) protein (572aa)
ABC transporter related Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZU8_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multidrug ABC transporter ATPase/permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3-1_170_b2_sep16_scaffold_1555_6
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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9870..11699
DNA (1830bp) protein (610aa)
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
ABC transporter-like protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b2_sep16_scaffold_1555_7
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12083..12394
DNA (312bp) protein (104aa)
suhB; inositol-1-monophosphatase (Inositol-1-phosphatase) (I-1-Pase) (EC:3.1.3.25)
Inositol-1-monophosphatase (IMPase) (Inositol-1-phosphatase) (I-1-Pase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHK5_9BACT
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM3-1_170_b2_sep16_scaffold_1555_8
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(12730..13707)
DNA (978bp) protein (326aa)
Enoyl-[acyl carrier protein] reductase II protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AGL2_IGNAJ
Enoyl-[acyl carrier protein] reductase II protein
Enoyl-[acyl carrier protein] reductase II protein {ECO:0000313|EMBL:AFH48119.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
PLM3-1_170_b2_sep16_scaffold_1555_9
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13704..13949)
DNA (246bp) protein (82aa)
aroC1; Chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
Chorismate synthase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2E7_SPHTD
Displaying 11 items

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