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PLM3-1_170_b2_sep16_scaffold_5430

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_5430_1
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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1..1095
DNA (1095bp) protein (365aa)
hypothetical protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3-1_170_b2_sep16_scaffold_5430_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1097..2680)
DNA (1584bp) protein (528aa)
CHAD domain containing protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARY5_RUBXD
CHAD domain-containing protein
CHAD domain containing protein {ECO:0000313|EMBL:ABG05843.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3-1_170_b2_sep16_scaffold_5430_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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comp(2684..3190)
DNA (507bp) protein (169aa)
Phosphohistidine phosphatase, SixA Tax=Roseiflexus sp. (strain RS-1) RepID=A5UV59_ROSS1
phosphohistidine phosphatase SixA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b2_sep16_scaffold_5430_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3264..4142)
DNA (879bp) protein (293aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2BLC1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3-1_170_b2_sep16_scaffold_5430_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4274..5104)
DNA (831bp) protein (277aa)
alias=16ft_combo_ws3_scaffold_1578_39 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_5430_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5101..5661)
DNA (561bp) protein (187aa)
RNA polymerase sigma factor Tax=Plesiocystis pacifica SIR-1 RepID=A6GDP6_9DELT bin=16ft_combo_ws3_JS1 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sigW3; RNA polymerase sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_5430_7
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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5762..6172
DNA (411bp) protein (137aa)
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_170_b2_sep16_scaffold_5430_8
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6296..7783
DNA (1488bp) protein (496aa)
Exopolyphosphatase bin=GWB2_Deltaproteobacteria_65_81 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
ppx2; hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM3-1_170_b2_sep16_scaffold_5430_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

7797..9317
DNA (1521bp) protein (507aa)
Ppx/GppA phosphatase bin=GWF2_Lentisphaerae_57_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Ppx/GppA phosphatase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3-1_170_b2_sep16_scaffold_5430_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9458..11272)
DNA (1815bp) protein (605aa)
Ferrous iron transport protein B Tax=Azospirillum sp. (strain B510) RepID=D3P2V1_AZOS1
feoB; ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:BAI75121.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3-1_170_b2_sep16_scaffold_5430_11
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11256..11522)
DNA (267bp) protein (89aa)
FeoA Tax=Plesiocystis pacifica SIR-1 RepID=A6GDN6_9DELT
FeoA {ECO:0000313|EMBL:EDM76011.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
FeoA family protein
PLM3-1_170_b2_sep16_scaffold_5430_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11519..12091)
DNA (573bp) protein (191aa)
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DtxR family iron (metal) dependent repressor
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 12 items

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