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PLM3-1_170_b2_sep16_scaffold_5772

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_5772_1
Dickeya zeae, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..912
DNA (912bp) protein (304aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Tax=Dickeya zeae (strain Ech1591) RepID=C6CIY8_DICZE
D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACT05367.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya zeae (strain Ech1591).;"
PLM3-1_170_b2_sep16_scaffold_5772_2
unknown

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comp(1048..1329)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_5772_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1440..1973
DNA (534bp) protein (178aa)
L-threonine 3-dehydrogenase Tax=Desmospora sp. 8437 RepID=F5SC14_9BACL bin=16ft_combo_ws3_JS1 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
L-threonine 3-dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_5772_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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1970..3199
DNA (1230bp) protein (410aa)
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W46_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b2_sep16_scaffold_5772_5
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

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4091..5008
DNA (918bp) protein (306aa)
UbiA prenyltransferase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Lycopene elongase
Tax=RBG_16_Zixibacteria_40_9_curated
PLM3-1_170_b2_sep16_scaffold_5772_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5005..6099)
DNA (1095bp) protein (365aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_5772_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6100..7947)
DNA (1848bp) protein (616aa)
TPR-repeat-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tetratricopeptide TPR_1 repeat-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_5772_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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8163..9461
DNA (1299bp) protein (433aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
asnS; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase Tax=uncultured bacterium RepID=K2E9V9_9BACT
PLM3-1_170_b2_sep16_scaffold_5772_9
Streptomyces sp. NRRL S-495, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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9534..10145
DNA (612bp) protein (204aa)
scpD; Zinc carboxypeptidase (EC:3.4.17.-)
Zinc carboxypeptidase Tax=Streptomyces davawensis JCM 4913 RepID=K4R4Y2_9ACTO
Carboxypeptidase {ECO:0000313|EMBL:KJY32790.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-495.;"
Displaying 9 items

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