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PLM3-1_170_b2_sep16_scaffold_38765

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_38765_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3..428)
DNA (426bp) protein (142aa)
ECF subfamily RNA polymerase sigma factor Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N1U3_CORCM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92947.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3-1_170_b2_sep16_scaffold_38765_2
unknown

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1448..2254
DNA (807bp) protein (269aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_38765_3
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(2284..2580)
DNA (297bp) protein (99aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_13_Ignavibacteria_36_8_curated
PLM3-1_170_b2_sep16_scaffold_38765_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2627..3535)
DNA (909bp) protein (303aa)
Cytochrome c-related protein Tax=Algoriphagus machipongonensis RepID=A3HZ28_9BACT
Putative cytochrome c {ECO:0000313|EMBL:GAO42484.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
cytochrome c-like protein
PLM3-1_170_b2_sep16_scaffold_38765_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3955..4281
DNA (327bp) protein (109aa)
hypothetical protein Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003B3801B
putative sodium:solute symporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_38765_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4224..5372
DNA (1149bp) protein (383aa)
Na+/proline symporter Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKE8_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Na+/proline symporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_38765_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5369..6463
DNA (1095bp) protein (365aa)
TonB-dependent receptor plug Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKF0_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane receptor protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 7 items

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