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PLM3-1_170_b2_sep16_scaffold_3068

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3068_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..379
DNA (378bp) protein (126aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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391..2271
DNA (1881bp) protein (627aa)
Penicillin-binding protein 2 Tax=delta proteobacterium NaphS2 RepID=D8FEY7_9DELT
penicillin-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_3
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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2261..3364
DNA (1104bp) protein (368aa)
Rod shape-determining protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQZ1_SYNAS
rod shape-determining protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_3068_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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3753..4361
DNA (609bp) protein (203aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_3068_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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4386..6044
DNA (1659bp) protein (553aa)
Uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2E8_9BACT
PAS domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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6065..6361
DNA (297bp) protein (99aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP bin=GWF2_OP3_43_52 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6432..7784
DNA (1353bp) protein (451aa)
Putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF29_9BACT
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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8002..8781
DNA (780bp) protein (260aa)
adenylate/guanylate cyclase bin=bin3_NC10 species=Methyloferula stellata genus=Methyloferula taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
adenylate/guanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8908..9648
DNA (741bp) protein (247aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9810..10154)
DNA (345bp) protein (115aa)
Thioredoxin Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LIZ3_SYNFM
thioredoxin
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10168..11646)
DNA (1479bp) protein (493aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] bin=bin1_lowGC species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=bin1_lowGC organism_group=Unknown_CP
pepA; cytosolic aminopeptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11658..12206)
DNA (549bp) protein (183aa)
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 Tax=uncultured bacterium RepID=K1ZRX9_9BACT
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12330..13073)
DNA (744bp) protein (248aa)
Cytochrome c biogenesis protein CcdA bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13070..13624)
DNA (555bp) protein (185aa)
resA; thiol-disulfide oxidoreductase resA bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
resA; thiol-disulfide oxidoreductase resA
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_3068_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14574..15917)
DNA (1344bp) protein (448aa)
Putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF29_9BACT
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3068_16

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comp(16579..17799)
DNA (1221bp) protein (407aa)
Marine sediment metagenome DNA, contig: S06H3_L01963 {ECO:0000313|EMBL:GAI11556.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_3068_17

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comp(18112..19002)
DNA (891bp) protein (297aa)
Putative transposase Tax=uncultured bacterium 16A2 RepID=B4Y5L1_9BACT
Putative transposase {ECO:0000313|EMBL:ACB32188.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 16A2.;"
transposase mutator type
Displaying 17 items

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