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PLM3-1_170_b2_sep16_scaffold_215

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_215_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..356)
DNA (354bp) protein (118aa)
Mg2+ transporter protein, CorA-like protein Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126U3_POLSJ
Mg2+ transporter protein, CorA-like protein
Mg2+ transporter protein, CorA-like protein {ECO:0000313|EMBL:ABE45449.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM3-1_170_b2_sep16_scaffold_215_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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933..1487
DNA (555bp) protein (185aa)
Appr-1-p processing bin=GWD2_Deltaproteobacteria_55_8 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Appr-1-p processing
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_215_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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1535..2515
DNA (981bp) protein (327aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_4
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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2580..4004
DNA (1425bp) protein (475aa)
glycine reductase complex protein C large subunit (EC:2.7.-.-)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI00031A18B3
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3-1_170_b2_sep16_scaffold_215_5
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

4207..4332
DNA (126bp) protein (42aa)
grdA; glycine/sarcosine/betaine reductase complex protein A (EC:1.21.4.2 1.21.4.3 1.21.4.4)
Uncharacterized protein Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EB61_9FIRM
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3-1_170_b2_sep16_scaffold_215_6
Coprothermobacter proteolyticus, Coprothermobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4348..4662
DNA (315bp) protein (105aa)
glycine/sarcosine/betaine reductase complex protein A (EC:1.21.4.2 1.21.4.3 1.21.4.4)
Glycine/sarcosine/betaine reductase complex component A1 (Selenoprotein PA 1) (Thioredoxinreductase complex A 1) {ECO:0000313|EMBL:ACI18238.1}; EC=1.21.4.2 {ECO:0000313|EMBL:ACI18238.1};; EC=1.21.4.3 {ECO:0000313|EMBL:ACI18238.1};; EC=1.21.4.4 {ECO:0000313|EMBL:ACI18238.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermodesulfobiaceae; Coprothermobacter.;" source="Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT).;"
Glycine/sarcosine/betaine reductase complex component A1 (Selenoprotein PA 1) (Thioredoxinreductase complex A 1) Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=B5Y745_COPPD
PLM3-1_170_b2_sep16_scaffold_215_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4751..5746)
DNA (996bp) protein (332aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5865..6506
DNA (642bp) protein (214aa)
HAD family hydrolase (EC:3.1.3.18)
Predicted phosphatase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_215_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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6893..7291
DNA (399bp) protein (133aa)
Pyridoxamine 5'-phosphate oxidase bin=GWD2_Deltaproteobacteria_55_8 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7342..8022)
DNA (681bp) protein (227aa)
Polar amino acid ABC transporter, inner membrane subunit bin=GWF2_Methylomirabilis_70_14 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative polar amino acid ABC transporter, inner membrane subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_215_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8024..8749)
DNA (726bp) protein (242aa)
GltJ1 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gltJ1; protein GltJ1
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8866..9717)
DNA (852bp) protein (284aa)
gltB1; protein GltB1 (EC:1.4.1.13)
GltB1 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3-1_170_b2_sep16_scaffold_215_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(9728..10483)
DNA (756bp) protein (252aa)
Phosphate-transporting ATPase bin=bin7_NC10_sister species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Phosphate-transporting ATPase
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b2_sep16_scaffold_215_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10766..11224
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIA4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11304..12590
DNA (1287bp) protein (429aa)
gltA; citrate synthase (EC:2.3.3.1) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
citrate synthase I (EC:2.3.3.1)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_215_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12600..14000)
DNA (1401bp) protein (467aa)
Putative peptidoglycan-binding lytic transglycosylase Tax=Leptospirillum sp. Group II RepID=A3EW64_9BACT
lytic murein transglycosylase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_215_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14346..14657)
DNA (312bp) protein (104aa)
Uncharacterized protein Tax=Microbacterium maritypicum MF109 RepID=T5KAD5_9MICO
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_215_18
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15263..15535)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GFS6_NITSI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ02355.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
PLM3-1_170_b2_sep16_scaffold_215_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(15688..15909)
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ77_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b2_sep16_scaffold_215_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15906..16250)
DNA (345bp) protein (115aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b2_sep16_scaffold_215_21
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16293..17138)
DNA (846bp) protein (282aa)
extradiol ring-cleavage dioxygenase Tax=Martelella mediterranea RepID=UPI00036E2B13
extradiol ring-cleavage dioxygenase class III protein subunit B
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17200..18180)
DNA (981bp) protein (327aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18360..19559
DNA (1200bp) protein (400aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_24
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19626..20663
DNA (1038bp) protein (346aa)
Putative transporter bin=GWD2_Deltaproteobacteria_55_8 species=Maritimibacter alkaliphilus genus=Maritimibacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative ABC transporter substrate-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_215_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20768..22516
DNA (1749bp) protein (583aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00035E1E61
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_215_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22598..23668
DNA (1071bp) protein (357aa)
fbpC; Fe3+ ABC transporter ATPase FbpC/AfuC (EC:3.6.3.30)
Spermidine/putrescine ABC transporter ATPase subunit bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_215_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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23845..25914
DNA (2070bp) protein (690aa)
CoA-binding domain protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C154_SPHTD
CoA-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3-1_170_b2_sep16_scaffold_215_28
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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26442..26960
DNA (519bp) protein (173aa)
Tax=GWC2_Geobacteraceae_58_44_curated
Displaying 28 items

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