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PLM3-1_170_b2_sep16_scaffold_329

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_329_1
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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3..470
DNA (468bp) protein (156aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036B24DF
Peptide ABC transporter permease {ECO:0000313|EMBL:ETX08386.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Oligopeptide transport system permease AppC
PLM3-1_170_b2_sep16_scaffold_329_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

487..2100
DNA (1614bp) protein (538aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035CE991
Uncharacterized protein {ECO:0000313|EMBL:ETX08388.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Dipeptide ABC transporter (Dipeptide-binding protein)
PLM3-1_170_b2_sep16_scaffold_329_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2179..3168
DNA (990bp) protein (330aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000365F9E0
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3-1_170_b2_sep16_scaffold_329_4
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3162..4133
DNA (972bp) protein (324aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035E80A3
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3-1_170_b2_sep16_scaffold_329_5
unknown

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comp(4009..4656)
DNA (648bp) protein (216aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_329_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4996..5133)
DNA (138bp) protein (46aa)
id=2016262 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_329_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5443..6303)
DNA (861bp) protein (287aa)
Molybdopterin dehydrogenase FAD-binding bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
carbon monoxide dehydrogenase, medium subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_329_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6484..8769)
DNA (2286bp) protein (762aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_329_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9038..9589)
DNA (552bp) protein (184aa)
(2Fe-2S)-binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CoxS; aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_329_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9946..11604)
DNA (1659bp) protein (553aa)
Carboxylyase-related protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Vdcc protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_329_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11705..13108
DNA (1404bp) protein (468aa)
Cysteine--tRNA ligase Tax=Geobacter metallireducens RepID=SYC_GEOMG
cysS; cysteinyl-tRNA ligase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_329_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13093..14964
DNA (1872bp) protein (624aa)
ATPase Tax=Phaeobacter gallaeciensis RepID=UPI0002EA1231
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_329_trna_1
unknown

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15001..15074
DNA (74bp)
transferRNA Arg
PLM3-1_170_b2_sep16_scaffold_329_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15163..16386)
DNA (1224bp) protein (408aa)
ATPase bin=GWF2_Methylomirabilis_70_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3-1_170_b2_sep16_scaffold_329_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16824..17753
DNA (930bp) protein (310aa)
Fumarylacetoacetate (FAA) hydrolase family protein bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fumarylacetoacetate (FAA) hydrolase family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3-1_170_b2_sep16_scaffold_329_15
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18154..20364
DNA (2211bp) protein (737aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) Tax=Variovorax paradoxus (strain S110) RepID=C5D0M6_VARPS
Uncharacterized protein {ECO:0000313|EMBL:KIF78412.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
PLM3-1_170_b2_sep16_scaffold_329_16
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20366..22198
DNA (1833bp) protein (611aa)
N-methylhydantoinase B/acetone carboxylase, alpha subunit Tax=Rhizobium sp. CF080 RepID=J3BLB5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIF78413.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
N-methylhydantoinase B
PLM3-1_170_b2_sep16_scaffold_329_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22442..23215)
DNA (774bp) protein (258aa)
nitroreductase bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
putative oxidoreductase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_329_18
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23783..24577
DNA (795bp) protein (265aa)
Putative short-chain dehydrogenase/reductase SDR Tax=uncultured bacterium 888 RepID=B8R8R5_9BACT
Oxidoreductase {ECO:0000313|EMBL:ETX04087.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
short-chain dehydrogenase/reductase SDR
PLM3-1_170_b2_sep16_scaffold_329_19
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24746..26860
DNA (2115bp) protein (705aa)
hypothetical protein Tax=Desulfobacter curvatus RepID=UPI00037596E6
CoA-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3-1_170_b2_sep16_scaffold_329_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27124..27396
DNA (273bp) protein (91aa)
id=1829437 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 21 items

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