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PLM3-1_170_b2_sep16_scaffold_427

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_427_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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2..235
DNA (234bp) protein (78aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B6A897
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_427_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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259..735
DNA (477bp) protein (159aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-)
6,7-dimethyl-8-ribityllumazine synthase Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DXN5_SULAA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_427_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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871..1122
DNA (252bp) protein (84aa)
N utilization substance protein B homolog bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_427_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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1240..3717
DNA (2478bp) protein (826aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
leuS; leucyl-tRNA ligase
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b2_sep16_scaffold_427_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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3784..4335
DNA (552bp) protein (184aa)
Lipoprotein, putative bin=GWD2_Deltaproteobacteria_55_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lptE; lipopolysaccharide biogenesis outer membrane chaperone lipoprotein LptE
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_427_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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6299..7009
DNA (711bp) protein (237aa)
Sec-independent protein translocase, TatC subunit bin=GWD2_Deltaproteobacteria_55_8 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
twin arginine targeting protein translocase subunit TatC
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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7237..9363
DNA (2127bp) protein (709aa)
K(+)-insensitive pyrophosphate-energized proton pump bin=GWA2_Elusimicrobia_66_18 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Pyrophosphate-energized proton pump
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_trna_1
unknown

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9467..9554
DNA (88bp)
transferRNA Leu
PLM3-1_170_b2_sep16_scaffold_427_8
unknown

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10166..10375
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_427_9
unknown

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10782..11243
DNA (462bp) protein (154aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_427_10
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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11422..12216
DNA (795bp) protein (265aa)
Putative Endonuclease Tax=Nitrospina gracilis 3/211 RepID=M1YZ60_9BACT
Putative Endonuclease {ECO:0000313|EMBL:CCQ91009.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
S1/P1 Nuclease
PLM3-1_170_b2_sep16_scaffold_427_11
CSP1_5_NC10, NC10, Bacteria

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comp(12283..12672)
DNA (390bp) protein (130aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_427_12
unknown

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comp(12778..13353)
DNA (576bp) protein (192aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_427_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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13635..14630
DNA (996bp) protein (332aa)
Luciferase-like, subgroup bin=GWD2_Deltaproteobacteria_55_8 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
luciferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_427_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14782..15504
DNA (723bp) protein (241aa)
Probable phenylacetic acid degradation protein paaA bin=GWD2_Deltaproteobacteria_55_8 species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phenylacetic acid degradation protein paaA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15519..15710
DNA (192bp) protein (64aa)
id=2043724 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15843..16610
DNA (768bp) protein (256aa)
Electron transfer flavoprotein alpha/beta-subunit bin=GWD2_Deltaproteobacteria_55_8 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
electron transfer flavoprotein subunit alpha/beta
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16611..17579
DNA (969bp) protein (323aa)
Electron transfer flavoprotein alpha subunit bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Electron transfer flavoprotein alpha subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_427_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17900..18457
DNA (558bp) protein (186aa)
id=1984325 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_427_19
unknown

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18791..19267
DNA (477bp) protein (159aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_427_20
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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19301..19621
DNA (321bp) protein (107aa)
Nucleotidyltransferase domain, putative Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YC02_DICT6
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3-1_170_b2_sep16_scaffold_427_21
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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19618..20034
DNA (417bp) protein (139aa)
hypothetical protein
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_13_Planctomycetes_60_9_curated
PLM3-1_170_b2_sep16_scaffold_427_22
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20148..21056)
DNA (909bp) protein (303aa)
Uncharacterized protein Tax=Methylomicrobium album BG8 RepID=H8GNC2_METAL
Uncharacterized protein {ECO:0000313|EMBL:EIC28351.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
putative serine protein kinase PrkA
PLM3-1_170_b2_sep16_scaffold_427_23
unknown

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comp(21155..21262)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 24 items

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