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PLM3-1_170_b2_sep16_scaffold_5315

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_5315_1
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

2..685
DNA (684bp) protein (228aa)
Tax=RBG_16_Chloroflexi_48_8_curated
PLM3-1_170_b2_sep16_scaffold_5315_2
unknown

Not on your lists

comp(560..919)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_5315_3
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

968..2305
DNA (1338bp) protein (446aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B4446A
Uncharacterized protein {ECO:0000313|EMBL:GAM09852.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
O-antigen polymerase
PLM3-1_170_b2_sep16_scaffold_5315_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2889..3974)
DNA (1086bp) protein (362aa)
Reactivating factor for ethanolamine ammonia lyase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_5315_5
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3971..4363)
DNA (393bp) protein (131aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034AF6A2
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3-1_170_b2_sep16_scaffold_5315_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4702..5706)
DNA (1005bp) protein (335aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E82_MESSB
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein {ECO:0000313|EMBL:ABG64293.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
PLM3-1_170_b2_sep16_scaffold_5315_7
unknown

Not on your lists

5786..5968
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_5315_8
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

6189..7013
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PHJ8_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3-1_170_b2_sep16_scaffold_5315_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

7118..7900
DNA (783bp) protein (261aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) {ECO:0000313|EMBL:CBE68702.1}; EC=2.-.-.- {ECO:0000313|EMBL:CBE68702.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG21_9BACT
PLM3-1_170_b2_sep16_scaffold_5315_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

7842..8363
DNA (522bp) protein (174aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) {ECO:0000313|EMBL:CBE68702.1}; EC=2.-.-.- {ECO:0000313|EMBL:CBE68702.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG21_9BACT
PLM3-1_170_b2_sep16_scaffold_5315_11
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

comp(8493..10100)
DNA (1608bp) protein (536aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
PLM3-1_170_b2_sep16_scaffold_5315_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10259..10750
DNA (492bp) protein (164aa)
Transcriptional regulator, BadM/Rrf2 family bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_5315_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10782..11042
DNA (261bp) protein (87aa)
Iron-regulated ABC transporter ATPase subunit SufC Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123Y0_POLSJ
FeS assembly ATPase SufC
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_5315_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

11030..11437
DNA (408bp) protein (136aa)
sufC; SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein)
SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein) {ECO:0000313|EMBL:CBE69430.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_5315_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11482..12774
DNA (1293bp) protein (431aa)
SufD, needed for fhuF Fe-S center production/stability bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter permease
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_5315_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12786..14048
DNA (1263bp) protein (421aa)
Cysteine desulfurase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
SufS subfamily cysteine desulfurase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_5315_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14048..14500
DNA (453bp) protein (151aa)
Iron sulfur cluster assembly protein SufU bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iscU; SUF system FeS assembly protein, NifU family
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_5315_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14534..15091
DNA (558bp) protein (186aa)
FeS assembly SUF system protein SufT bin=GWD2_Deltaproteobacteria_55_8 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
FeS assembly SUF system protein SufT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_5315_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15116..15436
DNA (321bp) protein (107aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_5315_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15519..15941
DNA (423bp) protein (141aa)
Globin bin=GWD2_Deltaproteobacteria_55_8 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
globin
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_5315_21
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16404..16604)
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PC73_9BACT
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3-1_170_b2_sep16_scaffold_5315_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16767..17219)
DNA (453bp) protein (151aa)
Phosphate ABC transporter substrate-binding protein, PhoT family Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12D09_POLSJ
phosphate transport system substrate-binding protein
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:ABE43583.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Displaying 22 items

View Taxonomy