ggKbase home page

PLM3-1_170_b2_sep16_scaffold_3065

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3065_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

3..320
DNA (318bp) protein (106aa)
protein of unknown function DUF433 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3-1_170_b2_sep16_scaffold_3065_2
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

324..677
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I630_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM00718.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b2_sep16_scaffold_3065_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1606..1797)
DNA (192bp) protein (64aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00035F2AB6
Uncharacterized protein {ECO:0000313|EMBL:ETX04165.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_3065_4
unknown

Not on your lists

comp(2186..2350)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3065_5
R_Omnitrophica_50_24, Omnitrophica, Bacteria

Not on your lists

comp(2441..2800)
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1CBM6_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_50_24_curated
PLM3-1_170_b2_sep16_scaffold_3065_6
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2804..3055)
DNA (252bp) protein (84aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM3-1_170_b2_sep16_scaffold_3065_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(3826..4245)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG90_9BACT
hypothetical protein
UPF0301 protein DAMO_1713 {ECO:0000256|HAMAP-Rule:MF_00758}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_3065_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5187..5459
DNA (273bp) protein (91aa)
Toxin-antitoxin system, antitoxin component, PHD family bin=GWB2_Desulfobacterales_56_26 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
putative antitoxin YefM
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3-1_170_b2_sep16_scaffold_3065_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5459..5752
DNA (294bp) protein (98aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YJG9_9DELT
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM3-1_170_b2_sep16_scaffold_3065_10
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(6054..6470)
DNA (417bp) protein (139aa)
Putative uncharacterized protein bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM3-1_170_b2_sep16_scaffold_3065_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6467..7180)
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJB0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67475.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_3065_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(7287..8558)
DNA (1272bp) protein (424aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) {ECO:0000313|EMBL:CBE67927.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBE67927.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM41_9BACT
Displaying 12 items

View Taxonomy