ggKbase home page

PLM3_127_b1_sep16_scaffold_9255

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b1_sep16_scaffold_9255_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2..556
DNA (555bp) protein (185aa)
thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase
Tax=CSP1_5_NC10
PLM3_127_b1_sep16_scaffold_9255_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

604..1326
DNA (723bp) protein (241aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Ketol-acid reductoisomerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF94_9BACT
PLM3_127_b1_sep16_scaffold_9255_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

1373..1555
DNA (183bp) protein (61aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b1_sep16_scaffold_9255_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

1691..2593
DNA (903bp) protein (301aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862, ECO:0000313|EMBL:CBE68424.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Methylenetetrahydrofolate reductase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF95_9BACT
PLM3_127_b1_sep16_scaffold_9255_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

2837..3793
DNA (957bp) protein (319aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
tRNA delta(2)-isopentenylpyrophosphate transferase Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037DBE5D
PLM3_127_b1_sep16_scaffold_9255_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

3775..5106
DNA (1332bp) protein (444aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003638E7C
PLM3_127_b1_sep16_scaffold_9255_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

5132..5839
DNA (708bp) protein (236aa)
cmk; cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) (EC:2.7.4.14)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Cytidylate kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF99_9BACT
PLM3_127_b1_sep16_scaffold_9255_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

5939..6385
DNA (447bp) protein (149aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000379CE91
1-acyl-sn-glycerol-3-phosphate acyltransferase
PLM3_127_b1_sep16_scaffold_9255_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


6497..8224
DNA (1728bp) protein (576aa)
30S ribosomal protein S1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035E1547
rpsA; 30S ribosomal protein S1
30S ribosomal subunit protein S1 {ECO:0000313|EMBL:CBE68430.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_127_b1_sep16_scaffold_9255_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

8245..8913
DNA (669bp) protein (223aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26)
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:CBE68431.1}; EC=3.1.3.26 {ECO:0000313|EMBL:CBE68431.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
peptidase S49 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003814450
Displaying 10 items

View Taxonomy