ggKbase home page

PLM3-1_200_b1_sep16_scaffold_4904

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b1_sep16_scaffold_4904_1
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..303)
DNA (303bp) protein (101aa)
penicillin amidase Tax=Pseudomonas fluorescens RepID=UPI00031DE715
penicillin amidase
Penicillin amidase family protein {ECO:0000313|EMBL:AAY95109.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
PLM3-1_200_b1_sep16_scaffold_4904_2
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(278..667)
DNA (390bp) protein (130aa)
beta-lactam antibiotic acylase Tax=Laceyella sacchari RepID=UPI0003B3E56E
peptidase S45 penicillin amidase
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
PLM3-1_200_b1_sep16_scaffold_4904_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

744..980
DNA (237bp) protein (79aa)
BolA family protein bin=bin1_lowGC species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
BolA family protein
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b1_sep16_scaffold_4904_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

993..1319
DNA (327bp) protein (109aa)
monothiol glutaredoxin bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
glutaredoxin-like protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_4904_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

1496..2200
DNA (705bp) protein (235aa)
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Cecembia lonarensis LW9 RepID=K1KZ78_9BACT
monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_4904_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(2252..3475)
DNA (1224bp) protein (408aa)
rpoD; DNA-directed RNA polymerase, sigma70/sigma32 subunit bin=bin1_lowGC species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
RNA polymerase sigma factor RpoD
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b1_sep16_scaffold_4904_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(3527..4147)
DNA (621bp) protein (207aa)
TetR family transcriptional regulator bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
acnR; TetR family transcriptional regulator
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b1_sep16_scaffold_4904_8
GWA2_WOR_2_45_18_curated, WOR-2, Bacteria

Not on your lists

comp(4256..4426)
DNA (171bp) protein (57aa)
nupC; protein NupC
Na+ dependent nucleoside transporter domain protein, partial bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=GWA2_WOR_2_45_18_curated
PLM3-1_200_b1_sep16_scaffold_4904_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(4520..4960)
DNA (441bp) protein (147aa)
DoxX family protein Tax=Leptospira RepID=M6CGV8_9LEPT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_200_b1_sep16_scaffold_4904_10
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5118..6122)
DNA (1005bp) protein (335aa)
Drug resistance transporter, EmrB/QacA subfamily Tax=Synechocystis sp. PCC 7509 RepID=L8KT94_9SYNC
Major facilitator transporter {ECO:0000313|EMBL:KJH69489.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
EmrB/QacA subfamily drug resistance transporter
Displaying 10 items

View Taxonomy