ggKbase home page

PLM3_127_b2_sep16_scaffold_2567

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2567_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1..600
DNA (600bp) protein (200aa)
Pyruvate dehydrogenase (Acetyl-transferring) bin=GWF2_Methylomirabilis_70_14 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate dehydrogenase E1 component alpha subunit
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2567_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

648..1484
DNA (837bp) protein (279aa)
F420-dependent oxidoreductase bin=bin1_lowGC species=Streptomyces aurantiacus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2567_3

Not on your lists

comp(1575..2918)
DNA (1344bp) protein (448aa)
UbiD family decarboxylase Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R3V7_SPISS
3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases {ECO:0000313|EMBL:AIF15960.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_72_A09.;"
UbiD family decarboxylase
PLM3_127_b2_sep16_scaffold_2567_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3005..5329
DNA (2325bp) protein (775aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2567_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5355..6128
DNA (774bp) protein (258aa)
Beta-lactamase like protein Tax=Burkholderia terrae BS001 RepID=I5CHF0_9BURK
beta-lactamase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_2567_6
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

6208..6459
DNA (252bp) protein (84aa)
Transcriptional regulator, CopG family Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CX08_TRURR
CopG family transcriptional regulator
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM3_127_b2_sep16_scaffold_2567_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6446..6760
DNA (315bp) protein (105aa)
Ribonuclease VapC Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CX07_TRURR
PIN domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2567_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7101..8438
DNA (1338bp) protein (446aa)
GAF domain-containing protein Tax=Mycobacterium indicus pranii MTCC 9506 RepID=J9WHT1_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:ETX05966.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
GAF domain-containing protein
PLM3_127_b2_sep16_scaffold_2567_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

8411..10459
DNA (2049bp) protein (683aa)
GAF domain-containing protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
GAF domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_2567_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10522..10953)
DNA (432bp) protein (144aa)
PIN domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Serinicoccus profundi genus=Serinicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
UPF0129 protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2567_11
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10957..11202)
DNA (246bp) protein (82aa)
Antitoxin Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WRW2_MYCKA
antitoxin
Antitoxin VapB33 {ECO:0000313|EMBL:EUA15910.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii 662.;"
PLM3_127_b2_sep16_scaffold_2567_12
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11374..11781
DNA (408bp) protein (136aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI00037E6163
Uncharacterized protein {ECO:0000313|EMBL:EIC30092.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2567_13
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11833..12021)
DNA (189bp) protein (63aa)
Formyl-CoA:oxalate CoA-transferase {ECO:0000256|HAMAP-Rule:MF_00742}; Short=FCOCT {ECO:0000256|HAMAP-Rule:MF_00742};; EC=2.8.3.16 {ECO:0000256|HAMAP-Rule:MF_00742};; Formyl-coenzyme A transferase {ECO:0000256|HAMAP-Rule:MF_00742}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
Formyl-coenzyme A transferase Tax=Burkholderia sp. RPE64 RepID=R4X1C8_9BURK
formyl-coenzyme A transferase
PLM3_127_b2_sep16_scaffold_2567_14

Not on your lists

12359..12637
DNA (279bp) protein (93aa)
Marine sediment metagenome DNA, contig: S03H2_L00999 {ECO:0000313|EMBL:GAH44761.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWF1_Spirochaetes_51_8 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
hypothetical protein
PLM3_127_b2_sep16_scaffold_2567_15
unknown

Not on your lists

12634..12834
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2567_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12925..14118)
DNA (1194bp) protein (398aa)
Formyl-CoA transferase Tax=Cupriavidus sp. HPC(L) RepID=V2I8Z6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETW95254.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
2-keto-4-pentenoate hydratase
PLM3_127_b2_sep16_scaffold_2567_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14225..15109
DNA (885bp) protein (295aa)
alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase (EC:1.14.11.-)
Probable taurine catabolism dioxygenase Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XT93_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_2567_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15358..17115
DNA (1758bp) protein (586aa)
ABC transporter ATPase (EC:3.6.3.-)
ABC-type transport system, ATPase component {ECO:0000313|EMBL:CBK43687.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK43687.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
ABC-type transport system, ATPase component bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PLM3_127_b2_sep16_scaffold_2567_19
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17138..18724)
DNA (1587bp) protein (529aa)
Beta-lactamase domain protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08NI5_STIAD
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EXI68879.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
beta-lactamase domain-containing protein
PLM3_127_b2_sep16_scaffold_2567_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18904..19281)
DNA (378bp) protein (126aa)
PilT protein domain protein bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2567_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19278..19568)
DNA (291bp) protein (97aa)
id=4326332 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2567_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19809..21374
DNA (1566bp) protein (522aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX08073.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Glutathione ABC transport system substrate binding protein GsiB bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dipeptide ABC transporter substrate-binding protein
PLM3_127_b2_sep16_scaffold_2567_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22015..22197)
DNA (183bp) protein (61aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Kineosphaera limosa genus=Kineosphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2567_24
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22244..22483)
DNA (240bp) protein (80aa)
Tropinesterase (EC:3.1.1.10)
Alpha/beta hydrolase fold protein Tax=alpha proteobacterium BAL199 RepID=A8TSY8_9PROT
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EDP64385.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Displaying 24 items

View Taxonomy