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PLM3_127_b2_sep16_scaffold_2788

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2788_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1..1311)
DNA (1311bp) protein (437aa)
tRNA(Ile)-lysidine synthase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1368..2039)
DNA (672bp) protein (224aa)
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
moaDE; molybdopterin converting factor, subunits 1/2
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2788_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2048..2374)
DNA (327bp) protein (109aa)
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2788_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2418..3143)
DNA (726bp) protein (242aa)
GTP cyclohydrolase I bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3140..3703)
DNA (564bp) protein (188aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
folE; GTP cyclohydrolase I (EC:3.5.4.16)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2788_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3700..4113)
DNA (414bp) protein (138aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase bin=GWA2_Methylomirabilis_73_35 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2788_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4110..4346)
DNA (237bp) protein (79aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
6-pyruvoyl tetrahydrobiopterin synthase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2788_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4340..4492)
DNA (153bp) protein (51aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2788_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4489..5559)
DNA (1071bp) protein (357aa)
Glycosyl transferase, group 1 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5567..6349)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase protein (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2788_trna_1
unknown

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comp(6503..6574)
DNA (72bp)
transferRNA Met
PLM3_127_b2_sep16_scaffold_2788_11
unknown

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comp(6632..7042)
DNA (411bp) protein (137aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2788_12
Solea senegalensis, Solea, Pleuronectiformes, Neopterygii, Chordata, Metazoa

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7288..7536
DNA (249bp) protein (83aa)
PREDICTED: calsequestrin-1-like Tax=Oryzias latipes RepID=UPI0002A47CBB
Calsequestrin {ECO:0000256|RuleBase:RU000648}; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea.;" source="Solea senegalensis (Senegalese sole).;"
aspartic acid-rich protein aspolin2-1-like protein
PLM3_127_b2_sep16_scaffold_2788_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7564..8289
DNA (726bp) protein (242aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8435..8758)
DNA (324bp) protein (108aa)
lipoprotein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lipoprotein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8755..9336)
DNA (582bp) protein (194aa)
hypothetical protein bin=bin7_NC10_sister species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9333..9989)
DNA (657bp) protein (219aa)
glpC; ferredoxin bin=bin7_NC10_sister species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative fe-S oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10938..11387)
DNA (450bp) protein (150aa)
Rubrerythrin bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbr; rubrerythrin
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2788_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12018..14795
DNA (2778bp) protein (926aa)
Excinuclease ABC, subunit A bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
uvrA; excinuclease ABC subunit A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2788_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14887..16101
DNA (1215bp) protein (405aa)
Putative lipid-transfer protein bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiolase
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 20 items

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