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PLM3_127_b2_sep16_scaffold_3327

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3327_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2..421)
DNA (420bp) protein (140aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polynucleotide adenylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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445..813
DNA (369bp) protein (123aa)
Amidohydrolase 2 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(958..1575)
DNA (618bp) protein (206aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1948..3507)
DNA (1560bp) protein (520aa)
ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3327_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3811..4476)
DNA (666bp) protein (222aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_3327_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4828..5307)
DNA (480bp) protein (160aa)
twin-arginine translocation protein TatB; K03117 sec-independent protein translocase protein TatB bin=bin7_NC10_sister species=Centipeda periodontii genus=Centipeda taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative twin-arginine translocation protein TatB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5313..6272)
DNA (960bp) protein (320aa)
Probable phosphotransferase bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6274..7452)
DNA (1179bp) protein (393aa)
Glycogen synthase bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative mannosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_3327_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7491..8882)
DNA (1392bp) protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54 dependent DNA-binding response regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8875..10170)
DNA (1296bp) protein (432aa)
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10222..11304
DNA (1083bp) protein (361aa)
Glycosyl transferase group 1 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_3327_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11301..12167
DNA (867bp) protein (289aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_3327_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(12079..12909)
DNA (831bp) protein (277aa)
DNA polymerase LigD, ligase domain protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP92_OPITP
DNA polymerase LigD ligase subunit
DNA polymerase LigD, ligase domain protein {ECO:0000313|EMBL:ACB77581.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3_127_b2_sep16_scaffold_3327_14
unknown

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comp(13076..13426)
DNA (351bp) protein (117aa)

This feature has no annotations

Displaying 14 items

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