ggKbase home page

PLM3_127_b2_sep16_scaffold_4596

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4596_1
unknown

Not on your lists

2..193
DNA (192bp) protein (64aa)
phage integrase family protein
PLM3_127_b2_sep16_scaffold_4596_trna_1
unknown

Not on your lists

comp(202..273)
DNA (72bp)
transferRNA Thr
PLM3_127_b2_sep16_scaffold_4596_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

388..885
DNA (498bp) protein (166aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_4596_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

888..1082
DNA (195bp) protein (65aa)
Histone-like protein bin=GWC2_Methylomirabilis_70_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4596_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1136..2029
DNA (894bp) protein (298aa)
Serine-type D-Ala-D-Ala carboxypeptidase bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus sp. HGF7 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
D-alanyl-D-alanine carboxypeptidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4596_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2045..2698
DNA (654bp) protein (218aa)
Haloacid dehalogenase, type II bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloacid dehalogenase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_4596_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2781..2960)
DNA (180bp) protein (60aa)
Fused DNA topoisomerase I/SWI domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrosopumilus sp. AR2 genus=Nitrosopumilus taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fused DNA topoisomerase I/SWI domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4596_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3102..4241)
DNA (1140bp) protein (380aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003750DFF
Uncharacterized protein {ECO:0000313|EMBL:ETW98117.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase
PLM3_127_b2_sep16_scaffold_4596_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4238..5026)
DNA (789bp) protein (263aa)
3-oxoacyl-(Acyl-carrier-protein) reductase bin=GWC2_Methylomirabilis_70_16 species=Coprothermobacter proteolyticus genus=Coprothermobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4596_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5295..7019
DNA (1725bp) protein (575aa)
Phosphomethylpyrimidine synthase bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiC; thiamine biosynthesis protein ThiC
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_4596_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7227..8654)
DNA (1428bp) protein (476aa)
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_4596_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8657..9730)
DNA (1074bp) protein (358aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gnfL; nitrogen fixation master sensor histidine kinase, PAS domain-containing
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_4596_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(9741..10625)
DNA (885bp) protein (295aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_4596_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10648..11787)
DNA (1140bp) protein (380aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carboxyl-terminal protease (EC:3.4.21.-)
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_4596_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11888..12130)
DNA (243bp) protein (81aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 15 items

View Taxonomy