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PLM3_127_b2_sep16_scaffold_1356

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1356_1
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3..503
DNA (501bp) protein (167aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003767FBD
Vanadium chloroperoxidase {ECO:0000313|EMBL:CCH52608.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
PA-phosphatase-like phosphoesterase
PLM3_127_b2_sep16_scaffold_1356_2
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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556..1602
DNA (1047bp) protein (349aa)
Uncharacterized protein Tax=Pseudomonas sp. GM78 RepID=J2WT98_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF85359.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
PLM3_127_b2_sep16_scaffold_1356_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(1655..2563)
DNA (909bp) protein (303aa)
phosphoadenosine phosphosulfate reductase bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phosphoadenosine phosphosulfate reductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_1356_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2560..2763)
DNA (204bp) protein (68aa)
Putative Thiamine biosynthesis protein ThiS bin=GWA2_Methylomirabilis_73_35 species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative thiamine biosynthesis protein ThiS
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(2790..3335)
DNA (546bp) protein (182aa)
id=14626860 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1356_6
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3493..5586
DNA (2094bp) protein (698aa)
hypothetical protein Tax=Cohnella laeviribosi RepID=UPI00037C9FC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV27188.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
PLM3_127_b2_sep16_scaffold_1356_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5654..6223
DNA (570bp) protein (190aa)
NUDIX hydrolase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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6299..7675
DNA (1377bp) protein (459aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95673.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Cytosine deaminase-like metal-dependent hydrolase bin=GWC2_Methylomirabilis_70_16 species=Pseudomonas sp. GM79 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative hydrolase
PLM3_127_b2_sep16_scaffold_1356_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7782..8381
DNA (600bp) protein (200aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1356_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8399..9205)
DNA (807bp) protein (269aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(9205..9750)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor, sigma-70 family protein bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma factor, sigma-70 family
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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9887..10339
DNA (453bp) protein (151aa)
Hemoglobin-like protein HbN (Modular protein) Tax=Candidatus Nitrospira defluvii RepID=D8P7L8_9BACT
glbN; hemoglobin-like protein HBN
Hemoglobin-like protein HbN (Modular protein) {ECO:0000313|EMBL:CBK43364.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_127_b2_sep16_scaffold_1356_13
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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10383..10895
DNA (513bp) protein (171aa)
Uncharacterized protein Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HVB1_CYAP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL44563.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
PLM3_127_b2_sep16_scaffold_1356_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10892..11206
DNA (315bp) protein (105aa)
Cupin 2 conserved barrel domain protein bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium extorquens genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11302..12147
DNA (846bp) protein (282aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Pyrobaculum oguniense genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1356_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12144..12359
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ83_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31302.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
PLM3_127_b2_sep16_scaffold_1356_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12366..13412)
DNA (1047bp) protein (349aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000361F0ED
Uncharacterized protein {ECO:0000313|EMBL:ETX08036.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1356_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13852..14625
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XL53_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59404.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM3_127_b2_sep16_scaffold_1356_19
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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14773..15282
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BV36_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE15386.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_1356_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16038..16220)
DNA (183bp) protein (61aa)
PDZ/DHR/GLGF domain-containing protein bin=bin7_NC10_sister species=Methylobacterium populi genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1356_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16222..17202)
DNA (981bp) protein (327aa)
Dienelactone hydrolase bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S9 family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1356_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(17955..18227)
DNA (273bp) protein (91aa)
transposase bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transposase of ISMdi14, IS110 family
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 22 items

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