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PLM3_127_b2_sep16_scaffold_1500

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1500_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3..1724)
DNA (1722bp) protein (574aa)
adenylate/guanylate cyclase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate/guanylate cyclase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1500_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1894..2868)
DNA (975bp) protein (325aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1500_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2868..3854)
DNA (987bp) protein (329aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1500_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4497..5048
DNA (552bp) protein (184aa)
cobalbumin biosynthesis protein (EC:2.7.7.62)
adenosylcobinamide kinase bin=GWA2_Methylomirabilis_73_35 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5014..6075
DNA (1062bp) protein (354aa)
cobT; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1500_6
unknown

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6072..6179
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1500_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6176..6904
DNA (729bp) protein (243aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cobalamide ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6904..7923
DNA (1020bp) protein (340aa)
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
btuC; vitamin B12 import system permease protein BtuC
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1500_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7991..8773
DNA (783bp) protein (261aa)
Iron-enterobactin transporter ATP-binding protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1500_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9081..11042
DNA (1962bp) protein (654aa)
btuB; TonB-dependent outer membrane receptor for cobalamin and Fe transport; K02014 iron complex outermembrane recepter protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
TonB-dependent receptor
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1500_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11057..11743
DNA (687bp) protein (229aa)
Uncharacterized conserved protein bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1500_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11740..12804
DNA (1065bp) protein (355aa)
TonB family protein bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1500_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12955..13863
DNA (909bp) protein (303aa)
Cobalamin biosynthesis protein CobD bin=GWC2_Methylomirabilis_70_16 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cbiB; cobalamin biosynthesis protein CbiB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


13954..15633
DNA (1680bp) protein (560aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1500_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15635..16201
DNA (567bp) protein (189aa)
Sporulation and cell division repeat protein bin=GWA2_Methylomirabilis_73_35 species=Xanthomonas fragariae genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DedD protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16185..16727
DNA (543bp) protein (181aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Putative bifunctional protein tilS/hprT bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_1500_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16780..18597
DNA (1818bp) protein (606aa)
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18699..19514
DNA (816bp) protein (272aa)
Dihydropteroate synthase bin=GWC2_Methylomirabilis_70_16 species=Thermogladius cellulolyticus genus=Thermogladius taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydropteroate synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_1500_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19511..20863
DNA (1353bp) protein (451aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20860..21294
DNA (435bp) protein (145aa)
Holo-[acyl-carrier-protein] synthase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
holo-acyl-carrier-protein synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1500_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21337..21780
DNA (444bp) protein (148aa)
Putative uncharacterized protein yjeF bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1500_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21777..22889
DNA (1113bp) protein (371aa)
Putative uncharacterized protein yjeF bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
yjeF; carbohydrate kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22886..23308
DNA (423bp) protein (141aa)
Uncharacterized protein family UPF0079, ATPase bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23499..24164
DNA (666bp) protein (222aa)
DNA repair protein RadC bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA repair protein RadC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24161..24403)
DNA (243bp) protein (81aa)
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_1500_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24759..25754)
DNA (996bp) protein (332aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] bin=bin7_NC10_sister species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
pyrD; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25915..26667
DNA (753bp) protein (251aa)
Uncharacterized protein bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1500_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26667..27131
DNA (465bp) protein (155aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1500_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27112..28278
DNA (1167bp) protein (389aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Beta-ketoacyl synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1500_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28275..29012
DNA (738bp) protein (246aa)
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II bin=GWC2_Methylomirabilis_70_16 species=Streptomyces violaceusniger genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 35 in total

View Taxonomy