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PLM3_127_b2_sep16_scaffold_1908

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1908_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..395
DNA (393bp) protein (131aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLK6_SIDLE
Uncharacterized protein {ECO:0000313|EMBL:KJB92247.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
3-hydroxymyristoyl-ACP dehydratase
PLM3_127_b2_sep16_scaffold_1908_2
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(401..1288)
DNA (888bp) protein (296aa)
Protease HtpX homolog Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA84_NITMU
heat shock protein HtpX
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_1908_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1715..3559)
DNA (1845bp) protein (615aa)
ABC transporter Tax=Thauera RepID=N6YPC6_9RHOO
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1908_trna_4
unknown

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comp(3578..3650)
DNA (73bp)
transferRNA His
PLM3_127_b2_sep16_scaffold_1908_trna_3
unknown

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comp(3683..3756)
DNA (74bp)
transferRNA Arg
PLM3_127_b2_sep16_scaffold_1908_trna_2
unknown

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comp(3790..3863)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_1908_4
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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4008..4430
DNA (423bp) protein (141aa)
RNA polymerase-binding transcription factor DksA Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5Y0_NITMU
TraR/DksA family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1908_5
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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4636..4938
DNA (303bp) protein (101aa)
XRE family transcriptional regulator Tax=Aquaspirillum serpens RepID=UPI0003B45D1E
XRE family transcriptional regulator
Putative transcriptional regulator, XRE family protein {ECO:0000313|EMBL:ACO75051.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
PLM3_127_b2_sep16_scaffold_1908_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4942..5817)
DNA (876bp) protein (292aa)
Radical SAM domain protein Tax=Nitrosospira sp. APG3 RepID=M5DKW0_9PROT
Radical SAM domain protein {ECO:0000313|EMBL:CCU63527.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1908_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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6301..6933
DNA (633bp) protein (211aa)
putative thiol peroxidase (EC:1.11.1.-)
Putative Thiol peroxidase (Modular protein) {ECO:0000313|EMBL:CBK40959.1}; EC=1.11.1.- {ECO:0000313|EMBL:CBK40959.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Thiol peroxidase (Modular protein) Tax=Candidatus Nitrospira defluvii RepID=D8PCK0_9BACT
PLM3_127_b2_sep16_scaffold_1908_8
unknown

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comp(6855..7142)
DNA (288bp) protein (96aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1908_trna_1
unknown

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comp(7192..7278)
DNA (87bp)
transferRNA Ser
PLM3_127_b2_sep16_scaffold_1908_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7591..8277
DNA (687bp) protein (229aa)
Putative TEGT family carrier/transport protein Tax=Nitrosospira sp. APG3 RepID=M5DLL2_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1908_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8570..9886)
DNA (1317bp) protein (439aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Tax=Sulfuricella denitrificans skB26 RepID=S6AJY5_9PROT
rumA; 23S rRNA 5-methyluridine methyltransferase
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_1908_11
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10245..11021)
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6ABP3_9PROT
3'-5' exonuclease {ECO:0000313|EMBL:GAO36031.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1908_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11291..13162
DNA (1872bp) protein (624aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Phosphoenolpyruvate carboxykinase [GTP] Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AG96_GEOSK
pckA; phosphoenolpyruvate carboxykinase, GTP-dependent
PLM3_127_b2_sep16_scaffold_1908_13
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13340..14251)
DNA (912bp) protein (304aa)
Cysteine synthase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CR24_SIDLE
cysteine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1908_14
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14324..15331)
DNA (1008bp) protein (336aa)
ADP-L-glycero-D-manno-heptose-6-epimerase Tax=Sulfuricella denitrificans skB26 RepID=S6A9X7_9PROT
ADP-glyceromanno-heptose 6-epimerase
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM3_127_b2_sep16_scaffold_1908_15
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15344..16273)
DNA (930bp) protein (310aa)
RfaE bifunctional protein Tax=Sulfuricella denitrificans skB26 RepID=S6AJX9_9PROT
rfaE bifunctional protein
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_1908_16
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16298..17437)
DNA (1140bp) protein (380aa)
Nucleotide sugar dehydrogenase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHW7_AZOSU
nucleotide sugar dehydrogenase
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:AEV26321.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying 20 items

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