ggKbase home page

PLM3_127_b2_sep16_scaffold_804

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_804_1
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

376..1590
DNA (1215bp) protein (405aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSD5_SIDLE
PLM3_127_b2_sep16_scaffold_804_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1587..2180
DNA (594bp) protein (198aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSD4_SIDLE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_804_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2473..3390)
DNA (918bp) protein (306aa)
Putative phosphoenolpyruvate synthase regulatory protein Tax=Nitrosospira sp. APG3 RepID=M5DIB0_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_804_4
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3410..5758
DNA (2349bp) protein (783aa)
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase Tax=Nitrosospira sp. APG3 RepID=M5DSJ9_9PROT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_804_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5848..7521
DNA (1674bp) protein (558aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase Tax=Sulfuricella denitrificans skB26 RepID=S6ACB4_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_804_6
unknown

Not on your lists

7571..7663
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_804_7
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7671..8525
DNA (855bp) protein (285aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase Tax=Azoarcus sp. (strain BH72) RepID=KDSA_AZOSB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_804_8
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8557..9840
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Enolase Tax=Nitrosospira sp. APG3 RepID=M5DGB2_9PROT
enolase
PLM3_127_b2_sep16_scaffold_804_9
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9844..10152
DNA (309bp) protein (103aa)
Cell division protein FtsB Tax=Methylovorus sp. (strain MP688) RepID=E4QL29_METS6
septum formation initiator
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_804_10
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10131..10802)
DNA (672bp) protein (224aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256|HAMAP-Rule:MF_00316}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Molybdenum cofactor guanylyltransferase Tax=Azoarcus sp. KH32C RepID=H0PYI3_9RHOO
mobA; molybdopterin-guanine dinucleotide biosynthesis protein A
PLM3_127_b2_sep16_scaffold_804_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10869..11681)
DNA (813bp) protein (271aa)
Formate dehydrogenase accessory protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P4I2_AROAE
fdhD; formate dehydrogenase accessory protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_804_12
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12024..12611
DNA (588bp) protein (196aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TBB8_BURPP
molybdopterin oxidoreductase Fe4S4 region
Molybdopterin oxidoreductase Fe4S4 region {ECO:0000313|EMBL:ACD20860.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
PLM3_127_b2_sep16_scaffold_804_13
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12660..15089
DNA (2430bp) protein (810aa)
Formate dehydrogenase-O, major subunit (Formate dehydrogenase-O subunit alpha) (FDH-Z subunit alpha) (Aerobic formate dehydrogenase major subunit) bin=GWF2_Geobacter_54_21 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
formate dehydrogenase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM3_127_b2_sep16_scaffold_804_14

Not on your lists

15101..15988
DNA (888bp) protein (296aa)
formate dehydrogenase, iron-sulfur subunit (EC:1.2.1.2)
Formate dehydrogenase-O, Fe-S subunit Tax=mine drainage metagenome RepID=E6QSV8_9ZZZZ
Formate dehydrogenase-O, Fe-S subunit {ECO:0000313|EMBL:CBI10330.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_127_b2_sep16_scaffold_804_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15985..16605
DNA (621bp) protein (207aa)
Formate dehydrogenase O gamma subunit {ECO:0000313|EMBL:ELS26886.1}; EC=1.2.1.2 {ECO:0000313|EMBL:ELS26886.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035C1E31
nitrate-inducible formate dehydrogenase subunit gamma
PLM3_127_b2_sep16_scaffold_804_16

Not on your lists

16893..17711
DNA (819bp) protein (273aa)
Formate dehydrogenase formation protein Tax=mine drainage metagenome RepID=E6QSV6_9ZZZZ
Formate dehydrogenase formation protein {ECO:0000313|EMBL:CBI10328.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
formate dehydrogenase accessory protein FdhE
PLM3_127_b2_sep16_scaffold_804_17
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17741..19159
DNA (1419bp) protein (473aa)
hypothetical protein Tax=Thiobacillus denitrificans RepID=UPI0003700FDC
L-seryl-tRNA selenium transferase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM3_127_b2_sep16_scaffold_804_18
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19156..21114
DNA (1959bp) protein (653aa)
selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Selenocysteinyl-tRNA-specific translation factor {ECO:0000313|EMBL:CDI03083.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
translation elongation factor
PLM3_127_b2_sep16_scaffold_804_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21249..21704
DNA (456bp) protein (152aa)
Glycine cleavage system H protein Tax=root RepID=B5EMP0_ACIF5
glycine cleavage system H protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_804_20
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21688..22101
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AHF7_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_804_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22117..23820
DNA (1704bp) protein (568aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NAD-dependent, tungsten-containing formate dehydrogenase beta subunit Tax=Methyloversatilis universalis FAM5 RepID=F5RAR8_9RHOO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_804_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23982..26795
DNA (2814bp) protein (938aa)
zinc-containing alcohol dehydrogenase (EC:1.1.1.1)
Tungsten-containing formate dehydrogenase alpha subunit Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GQ75_CUPNN
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying 22 items

View Taxonomy