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PLM3_127_b2_sep16_scaffold_980

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_980_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..640)
DNA (639bp) protein (213aa)
Threonine dehydratase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C219_NITHN
threonine dehydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_980_2
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(744..947)
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0ABA4_COLFT
cold-shock protein
Cold-shock protein {ECO:0000313|EMBL:AJW47317.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
PLM3_127_b2_sep16_scaffold_980_3
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1195..2598
DNA (1404bp) protein (468aa)
MFS transporter Tax=Methylohalobius crimeensis RepID=UPI0003B33140
major facilitator superfamily transporter
Tax=RBG_16_Gammaproteobacteria_62_13__curated
PLM3_127_b2_sep16_scaffold_980_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2570..3439
DNA (870bp) protein (290aa)
Aldo/keto reductase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVK1_ACCPU
aldo/keto reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_980_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3759..4814)
DNA (1056bp) protein (352aa)
Fumarylacetoacetate (FAA) hydrolase Tax=Cupriavidus basilensis OR16 RepID=H1SC21_9BURK
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KGM35455.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
fumarylacetoacetate (FAA) hydrolase
PLM3_127_b2_sep16_scaffold_980_6
unknown

Not on your lists

comp(4830..5378)
DNA (549bp) protein (183aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_980_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5831..7228
DNA (1398bp) protein (466aa)
DNA polymerase III, epsilon subunit Tax=Methylovorus sp. (strain MP688) RepID=E4QQ09_METS6
polC; DNA polymerase III subunit epsilon
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_980_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7483..8268)
DNA (786bp) protein (262aa)
Alpha/beta hydrolase fold Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM47_9BACT
Alpha/beta hydrolase fold
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_980_9
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8409..9410
DNA (1002bp) protein (334aa)
Fumarylacetoacetate (FAA) hydrolase Tax=Pseudomonas fulva (strain 12-X) RepID=F6AIA8_PSEF1
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:AEF23934.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
PLM3_127_b2_sep16_scaffold_980_10
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

9422..10348
DNA (927bp) protein (309aa)
NAD-dependent epimerase/dehydratase bin=bin9_gal15 species=Paenibacillus sp. JC66 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
NAD-dependent epimerase/dehydratase
Tax=CSP1_3_Armatimonadetes
PLM3_127_b2_sep16_scaffold_980_11
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10410..11216)
DNA (807bp) protein (269aa)
GTP cyclohydrolase FolE2 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKS7_NITSI
GTP cyclohydrolase {ECO:0000313|EMBL:AKH39244.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_980_12
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11279..13123)
DNA (1845bp) protein (615aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
1-deoxy-D-xylulose-5-phosphate synthase Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKS8_NITSI
1-deoxy-D-xylulose-5-phosphate synthase
PLM3_127_b2_sep16_scaffold_980_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13138..14007)
DNA (870bp) protein (290aa)
Farnesyl diphosphate synthase (SelFPS) Tax=Synechococcus elongatus RepID=Q9S5F0_SYNEL
polyprenyl synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_980_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14021..14260)
DNA (240bp) protein (80aa)
Exodeoxyribonuclease 7 small subunit Tax=Sulfuricella denitrificans skB26 RepID=S6AAK2_9PROT
exodeoxyribonuclease VII small subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_980_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14491..15594
DNA (1104bp) protein (368aa)
Rieske (2Fe-2S) region Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCI0_NITMU
Rieske (2Fe-2S) domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_980_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15699..16538
DNA (840bp) protein (280aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000368E9CF
tst; thiosulfate sulfurtransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_980_17
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16656..17933)
DNA (1278bp) protein (426aa)
flavocytochrome C sulfide dehydrogenase Tax=Methyloversatilis universalis RepID=UPI00035F4E3C
NAD(FAD)-dependent dehydrogenase
Tax=BJP_IG2103_Rhodocyclales_63_50
PLM3_127_b2_sep16_scaffold_980_18
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17959..18267)
DNA (309bp) protein (103aa)
Cytochrome C class I Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z1M5_9RHOO
signal peptide protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_980_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18442..20706)
DNA (2265bp) protein (755aa)
ATP-dependent Clp protease ATP-binding subunit ClpA Tax=Nitrosospira sp. APG3 RepID=M5DFW1_9PROT
ATPase with chaperone activity
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_980_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20703..21011)
DNA (309bp) protein (103aa)
ATP-dependent Clp protease adapter protein ClpS Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=CLPS_NITMU
ATP-dependent Clp protease adaptor protein ClpS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_980_21
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21308..21511
DNA (204bp) protein (68aa)
Cold shock protein Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5AMY7_BURRH
Cold shock protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_980_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21604..22848)
DNA (1245bp) protein (415aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Isocitrate dehydrogenase [NADP] Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6T4_NITMU
isocitrate dehydrogenase, NADP-dependent
PLM3_127_b2_sep16_scaffold_980_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23452..25068
DNA (1617bp) protein (539aa)
malate synthase (EC:2.3.3.9)
Malate synthase Tax=Chloroflexus RepID=A9WG14_CHLAA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying 23 items

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