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PLM3_127_b2_sep16_scaffold_2040

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2040_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..426
DNA (426bp) protein (142aa)
AMMECR1 domain protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSY8_SIDLE
AMMECR1 domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_2040_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

423..1511
DNA (1089bp) protein (363aa)
Radical SAM Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222A3_RHOFD
radical SAM family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2040_3
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1620..2279)
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIK3_SINAD
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
PLM3_127_b2_sep16_scaffold_2040_4
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2322..2570)
DNA (249bp) protein (83aa)
Membrane protein Tax=Leptolyngbya sp. Heron Island J RepID=U9W1W0_9CYAN
Membrane protein {ECO:0000313|EMBL:ESA34031.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2040_5
R_Gammaproteobacteria_41_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2634..3665)
DNA (1032bp) protein (344aa)
Lipopolysaccharide heptosyltransferase I Tax=marine gamma proteobacterium HTCC2143 RepID=A0YG46_9GAMM
ADP-heptose--LPS heptosyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_41_15_curated
PLM3_127_b2_sep16_scaffold_2040_6

Not on your lists

comp(3662..4294)
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6QS04_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10026.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2040_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4340..4732)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKZ2_NITHX
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_2040_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5120..6166
DNA (1047bp) protein (349aa)
recA; recombinase A (EC:3.6.3.8)
Protein RecA bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6174..6620
DNA (447bp) protein (149aa)
hypothetical protein Tax=Methylophilus methylotrophus RepID=UPI00037E3199
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_10
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6714..7742
DNA (1029bp) protein (343aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_2040_11
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7761..9014
DNA (1254bp) protein (418aa)
Na+ dependent nucleoside transporter domain protein Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VZH8_DESAO
Na+ dependent nucleoside transporter domain-containing protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9044..11674
DNA (2631bp) protein (877aa)
alanyl-tRNA synthetase Tax=Herbaspirillum sp. JC206 RepID=UPI00031A7A05
alanyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_2040_13
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11742..12164
DNA (423bp) protein (141aa)
Putative uncharacterized protein Tax=Methyloversatilis universalis FAM5 RepID=F5RG82_9RHOO
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
PLM3_127_b2_sep16_scaffold_2040_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12208..13179)
DNA (972bp) protein (324aa)
ATP-dependent protease La (EC:3.4.21.53)
ATPase AAA Tax=Burkholderia sp. WSM4176 RepID=UPI000365B230
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13488..14516
DNA (1029bp) protein (343aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Azoarcus sp. KH32C RepID=H0PY16_9RHOO
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2040_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14632..15162
DNA (531bp) protein (177aa)
Cyclic nucleotide-binding domain protein Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYA5_9BURK
cyclic nucleotide-binding domain-containing protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15228..16049
DNA (822bp) protein (274aa)
Uncharacterized protein Tax=Massilia timonae CCUG 45783 RepID=K9DR88_9BURK
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16055..17401
DNA (1347bp) protein (449aa)
hypothetical protein Tax=Cupriavidus sp. BIS7 RepID=UPI0002FD0621
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_2040_19
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17447..18184)
DNA (738bp) protein (246aa)
Uncharacterized protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0AEW5_COLFT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_127_b2_sep16_scaffold_2040_20
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18181..18759)
DNA (579bp) protein (193aa)
RNA polymerase sigma factor Tax=Collimonas fungivorans (strain Ter331) RepID=G0AEW6_COLFT
sigma factor
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_2040_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18762..19313)
DNA (552bp) protein (184aa)
ATP/cobalamin adenosyltransferase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RMI6_ACCPU
ATP/cobalamin adenosyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_2040_22
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19536..20387
DNA (852bp) protein (284aa)
phosphonate ABC transporter substrate-binding protein Tax=Variovorax paradoxus RepID=UPI0003807BEC
phosphonate ABC transporter periplasmic phosphonate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_2040_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20399..21232
DNA (834bp) protein (278aa)
Phosphonate ABC transporter Tax=Ralstonia pickettii DTP0602 RepID=U3R1T0_RALPI
Phosphonate ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2040_24
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21229..22071
DNA (843bp) protein (281aa)
Phosphonate ABC transporter, inner membrane subunit Tax=Pseudomonas mendocina (strain ymp) RepID=A4XX86_PSEMY
phosphonate ABC transporter inner membrane subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_2040_25
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22068..22853
DNA (786bp) protein (262aa)
phosphonate ABC transporter permease Tax=Pseudomonas pelagia RepID=UPI00039AEF1A
phosphonate ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_2040_26
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

23084..23659
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IF09_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
PLM3_127_b2_sep16_scaffold_2040_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23727..24692
DNA (966bp) protein (322aa)
Radical SAM domain protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BZI9_NITHN
radical SAM protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_2040_28
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24685..25650
DNA (966bp) protein (322aa)
Uncharacterized protein Tax=Burkholderia glumae (strain BGR1) RepID=C5ANH9_BURGB
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_2040_29
unknown

Not on your lists

comp(25835..25948)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2040_30
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25974..27614)
DNA (1641bp) protein (547aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NYA3_AROAE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
Displaying items 1-30 of 39 in total

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