ggKbase home page

PLM3_127_b2_sep16_scaffold_10269

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_10269_1
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..326)
DNA (324bp) protein (108aa)
Alpha/beta hydrolase fold protein bin=GWC2_Syntrophus__56_31 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
alpha/beta hydrolase
Tax=GWC2_Syntrophus_56_31_curated
PLM3_127_b2_sep16_scaffold_10269_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

341..826
DNA (486bp) protein (162aa)
UPF0234 protein Nmul_A1044 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Y1044_NITMU
putative nucleotide-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_10269_3
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(810..1523)
DNA (714bp) protein (238aa)
Glutamine amidotransferase class-I Tax=Sulfuricella denitrificans skB26 RepID=S6AMG5_9PROT
glutamine amidotransferase class-I
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_10269_4
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1597..2163
DNA (567bp) protein (189aa)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI0003707EDA
signal peptide
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_10269_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2171..2857)
DNA (687bp) protein (229aa)
Protein-L-isoaspartate O-methyltransferase Tax=Pseudomonas sp. GM49 RepID=J3GHJ7_9PSED
protein-L-isoaspartate O-methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_10269_6
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2881..3684)
DNA (804bp) protein (268aa)
GTP cyclohydrolase FolE2 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKS7_NITSI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_10269_7
Pseudomonas sp. GM102, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3681..5360)
DNA (1680bp) protein (560aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM102.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase Tax=Pseudomonas sp. GM102 RepID=J2LMD0_9PSED
PLM3_127_b2_sep16_scaffold_10269_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5362..6264)
DNA (903bp) protein (301aa)
Farnesyl diphosphate synthase (SelFPS) Tax=Synechococcus elongatus RepID=Q9S5F0_SYNEL
polyprenyl synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_10269_9
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6251..6514)
DNA (264bp) protein (88aa)
xseB; exodeoxyribonuclease vii small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R5H6_CUPTR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_10269_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6555..7652
DNA (1098bp) protein (366aa)
Rieske (2Fe-2S) protein Tax=Methyloversatilis sp. NVD RepID=UPI0003661250
Rieske (2Fe-2S) domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_10269_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7649..8578)
DNA (930bp) protein (310aa)
Threonine dehydratase Tax=Singulisphaera acidiphila RepID=L0DI97_SINAD
threonine dehydratase
Threonine dehydratase {ECO:0000313|EMBL:AGA28538.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_127_b2_sep16_scaffold_10269_12
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8600..9430
DNA (831bp) protein (277aa)
Rhodanese-related sulfurtransferase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLB9_AZOSU
rhodanese-related sulfurtransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_10269_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9594..9794)
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_10269_14
unknown

Not on your lists

comp(9926..10066)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 14 items

View Taxonomy