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PLM3_127_b2_sep16_scaffold_2397

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2397_1
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..414
DNA (414bp) protein (138aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI0003825675
Protein Smg homolog {ECO:0000256|HAMAP-Rule:MF_00598}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga aminisulfidivorans MP.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2397_2
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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494..2998
DNA (2505bp) protein (835aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
DNA topoisomerase 1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GU07_THISH
PLM3_127_b2_sep16_scaffold_2397_3
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

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3379..6429
DNA (3051bp) protein (1017aa)
hypothetical protein Tax=Microbulbifer variabilis RepID=UPI0003750558
peptidase S08 family protein
Tax=RBG_16_Chloroflexi_54_18_curated
PLM3_127_b2_sep16_scaffold_2397_4
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(6532..7281)
DNA (750bp) protein (250aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBL4_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ42179.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM3_127_b2_sep16_scaffold_2397_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7439..8293
DNA (855bp) protein (285aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Ribosomal RNA large subunit methyltransferase J Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z667_AZOL4
hypothetical protein
PLM3_127_b2_sep16_scaffold_2397_6
GWD2_Elusimicrobia_63_28_curated, Elusimicrobia, Bacteria

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comp(8298..8921)
DNA (624bp) protein (208aa)
DNA-3-methyladenine glycosylase I bin=GWA2_Elusimicrobia_51_34 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
hypothetical protein
Tax=GWD2_Elusimicrobia_63_28_curated
PLM3_127_b2_sep16_scaffold_2397_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8984..9577)
DNA (594bp) protein (198aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_2397_8
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9574..10119)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor Tax=Glaciecola RepID=F4AJQ7_GLAS4
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM3_127_b2_sep16_scaffold_2397_9
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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10207..11043
DNA (837bp) protein (279aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000255|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000255|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000255|HAMAP-Rule:MF_00222};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI0003733970
PLM3_127_b2_sep16_scaffold_2397_10
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11051..12394)
DNA (1344bp) protein (448aa)
Glutathione-disulfide reductase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTH0_THISH
glutathione-disulfide reductase
Glutathione-disulfide reductase {ECO:0000313|EMBL:ACL71230.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_2397_11
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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12479..14497
DNA (2019bp) protein (673aa)
Oligopeptidase A (EC:3.4.24.70)
Oligopeptidase A {ECO:0000313|EMBL:ADC61268.1}; EC=3.4.24.70 {ECO:0000313|EMBL:ADC61268.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Oligopeptidase A Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RML0_ALLVD
PLM3_127_b2_sep16_scaffold_2397_12
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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14494..15105
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BPV8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:BAN68054.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2397_13
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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15119..15910
DNA (792bp) protein (264aa)
exodeoxyribonuclease III Tax=Massilia niastensis RepID=UPI00035F5F6A
exodeoxyribonuclease III Xth
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ADC70524.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
PLM3_127_b2_sep16_scaffold_2397_14
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

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16008..17009
DNA (1002bp) protein (334aa)
Putative uncharacterized protein Tax=gamma proteobacterium HTCC5015 RepID=B5JWX8_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EDY85904.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2397_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(17006..18256)
DNA (1251bp) protein (417aa)
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG89683.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase ECF-subfamily sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=bin8_Chloro species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
PLM3_127_b2_sep16_scaffold_2397_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(18274..18627)
DNA (354bp) protein (118aa)
DGPF domain-containing protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CPX5_MYXFH
YCII-related protein
YCII-related protein {ECO:0000313|EMBL:AHG89684.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_127_b2_sep16_scaffold_2397_17
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18759..19625
DNA (867bp) protein (289aa)
1-deoxy-D-xylulose-5-phosphate reductoisomerase protein Tax=Salinisphaera shabanensis E1L3A RepID=U2EQK8_9GAMM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:KFE69966.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
short chain dehydrogenase
PLM3_127_b2_sep16_scaffold_2397_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19614..20306)
DNA (693bp) protein (231aa)
Serine-type D-Ala-D-Ala carboxypeptidase Tax=Kingella denitrificans ATCC 33394 RepID=F0EXL4_9NEIS
putative carboxypeptidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2397_19
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20306..20731)
DNA (426bp) protein (142aa)
UPI0003CDDA86 related cluster Tax=unknown RepID=UPI0003CDDA86
Aldehyde-activating protein {ECO:0000313|EMBL:ESY69890.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
glutathione-dependent formaldehyde-activating GFA
PLM3_127_b2_sep16_scaffold_2397_20
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20739..21377)
DNA (639bp) protein (213aa)
DSBA oxidoreductase Tax=Methylobacterium sp. WSM2598 RepID=UPI0003817698
Polyketide biosynthesis dithiol-disulfide isomerase {ECO:0000313|EMBL:EKE77650.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ywbO; DSBA oxidoreductase
PLM3_127_b2_sep16_scaffold_2397_21
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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22205..24076
DNA (1872bp) protein (624aa)
Sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS domain-containing Tax=Geobacter sulfurreducens RepID=D7AH91_GEOSK
sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS domain-containing
Sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS domain-containing {ECO:0000313|EMBL:AAR34273.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM3_127_b2_sep16_scaffold_2397_22
unknown

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24129..24908
DNA (780bp) protein (260aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2397_23
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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24943..26841
DNA (1899bp) protein (633aa)
ABC transporter related protein Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E935_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AKH20952.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
ABC transporter
PLM3_127_b2_sep16_scaffold_2397_24
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26970..28364
DNA (1395bp) protein (465aa)
Uncharacterized protein Tax=Marinobacter lipolyticus SM19 RepID=R8AZ78_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EON91607.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter lipolyticus SM19.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2397_25
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28325..28876)
DNA (552bp) protein (184aa)
SNase-like protein Tax=Pseudomonas psychrotolerans L19 RepID=H0JIG6_9PSED
SNase-like protein {ECO:0000313|EMBL:EHK69131.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas psychrotolerans L19.;"
micrococcal nuclease
PLM3_127_b2_sep16_scaffold_2397_26
unknown

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comp(28906..29019)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 26 items

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