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PLM3_127_b2_sep16_scaffold_2638

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2638_trna_1
unknown

Not on your lists

comp(342..412)
DNA (71bp)
transferRNA Gln
PLM3_127_b2_sep16_scaffold_2638_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(481..873)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 Tax=Beggiatoa alba B18LD RepID=I3CJA5_9GAMM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
rpsI; 30S ribosomal protein S9
PLM3_127_b2_sep16_scaffold_2638_2
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(904..1332)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBA7_9GAMM
rplM; large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
PLM3_127_b2_sep16_scaffold_2638_3
unknown

Not on your lists

comp(1608..1805)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2638_4
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1825..2076
DNA (252bp) protein (84aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RVL5_ALLVD
putative ubiquinone biosynthesis protein
PLM3_127_b2_sep16_scaffold_2638_5

Not on your lists

2155..2904
DNA (750bp) protein (250aa)
Transcriptional regulator, Crp/Fnr family (Fragment) Tax=mine drainage metagenome RepID=T1CF35_9ZZZZ
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EQD80223.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
crp; cAMP-regulatory protein
PLM3_127_b2_sep16_scaffold_2638_6
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2912..3601)
DNA (690bp) protein (230aa)
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Ribulose-phosphate 3-epimerase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A4R3_ALKEH
PLM3_127_b2_sep16_scaffold_2638_7
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3611..4402)
DNA (792bp) protein (264aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI00037E8959
Molecular chaperone DnaJ {ECO:0000313|EMBL:AKE51371.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
djlA; Dna-J like membrane chaperone protein
PLM3_127_b2_sep16_scaffold_2638_8
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4453..5400
DNA (948bp) protein (316aa)
phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
phosphoribosylaminoimidazole-succinocarboxamide synthase Tax=Methyloversatilis sp. NVD RepID=UPI00036C4F88
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_127_b2_sep16_scaffold_2638_9
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5413..6210)
DNA (798bp) protein (266aa)
ABC transporter substrate-binding protein Tax=Nevskia ramosa RepID=UPI0003B72C01
periplasmic-binding protein
Tax=RBG_16_Gamma2_64_11_curated
PLM3_127_b2_sep16_scaffold_2638_10
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6335..7654
DNA (1320bp) protein (440aa)
Ribonuclease BN Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DZM9_THIND
rbn_[C]; Ribonuclease BN
Ribonuclease BN {ECO:0000313|EMBL:AGA33846.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM3_127_b2_sep16_scaffold_2638_11
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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7850..10123
DNA (2274bp) protein (758aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Nitrosomonas sp. AL212 RepID=F9ZGR5_9PROT
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ADZ27218.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
PLM3_127_b2_sep16_scaffold_2638_12
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10135..11475)
DNA (1341bp) protein (447aa)
Microcin-processing peptidase 1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0ABM0_ALKEH
microcin-processing peptidase 1
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM3_127_b2_sep16_scaffold_2638_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11559..12173
DNA (615bp) protein (205aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B73006
Uncharacterized protein {ECO:0000313|EMBL:KGQ18422.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2638_14
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12176..12673
DNA (498bp) protein (166aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036EE258
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL73345.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_2638_15
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

12678..13178
DNA (501bp) protein (167aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NMP0_MARHT
PLM3_127_b2_sep16_scaffold_2638_16
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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13175..14263
DNA (1089bp) protein (363aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Phosphoribosylaminoimidazole carboxylase, ATPase subunit Tax=delta proteobacterium MLMS-1 RepID=Q1NMA1_9DELT
phosphoribosylaminoimidazole carboxylase ATPase subunit
PLM3_127_b2_sep16_scaffold_2638_17

Not on your lists

14326..15573
DNA (1248bp) protein (416aa)
Secretion ATPase, PEP-CTERM locus subfamily (Fragment) Tax=mine drainage metagenome RepID=T0ZJP2_9ZZZZ
Secretion ATPase, PEP-CTERM locus subfamily {ECO:0000313|EMBL:EQD30025.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type II secretory pathway component ExeA-like protein
PLM3_127_b2_sep16_scaffold_2638_18
unknown

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comp(15598..15855)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2638_19
unknown

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comp(16138..16320)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2638_20
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16697..17386)
DNA (690bp) protein (230aa)
Anti-ECFsigma factor, ChrR Tax=Congregibacter litoralis KT71 RepID=A4AC30_9GAMM
Anti-ECFsigma factor, ChrR {ECO:0000313|EMBL:EAQ96480.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" source="Congregibacter litoralis KT71.;"
anti-ECFsigma factor ChrR
PLM3_127_b2_sep16_scaffold_2638_21
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17483..17848)
DNA (366bp) protein (122aa)
Putative uncharacterized protein Tax=Shewanella sp. HN-41 RepID=F7RIW7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGM71696.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_2638_22
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18036..19484)
DNA (1449bp) protein (483aa)
TldD protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BQM9_9GAMM
TldD protein {ECO:0000313|EMBL:EAR21879.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
TldD protein
PLM3_127_b2_sep16_scaffold_2638_23
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19481..20293)
DNA (813bp) protein (271aa)
apolipoprotein acyltransferase Tax=Thioalkalivibrio sp. ALJT RepID=UPI0003714AB5
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ACL73348.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_2638_24
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20290..22629)
DNA (2340bp) protein (780aa)
Membrane protein-like protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GV04_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK79692.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
PLM3_127_b2_sep16_scaffold_2638_25
unknown

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comp(22712..23476)
DNA (765bp) protein (255aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2638_26
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23424..23969)
DNA (546bp) protein (182aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037F6D08
hypothetical protein
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM3_127_b2_sep16_scaffold_2638_27
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24041..25510)
DNA (1470bp) protein (490aa)
Ribonuclease, Rne/Rng family Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RP43_ALLVD
ribonuclease, Rne/Rng family
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:AGA91324.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
PLM3_127_b2_sep16_scaffold_2638_28
Serpens flexibilis, Serpens, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25510..26112)
DNA (603bp) protein (201aa)
septum formation protein Maf Tax=Pseudomonas sp. 313 RepID=UPI0003065F6F
Maf-like protein SF06_17040 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Serpens.;" source="Serpens flexibilis.;"
septum formation protein Maf
PLM3_127_b2_sep16_scaffold_2638_29
Caenorhabditis brenneri, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

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comp(26305..29160)
DNA (2856bp) protein (952aa)
Uncharacterized protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U1M8_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:EGT47040.1}; species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis brenneri (Nematode worm).;"
cell surface protein precursor SprD
Displaying items 1-30 of 34 in total

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