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PLM3_127_b2_sep16_scaffold_1964

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1964_1
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..376)
DNA (375bp) protein (125aa)
Peptidase M48 Ste24p Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCA8_GALCS
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ADL54573.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
PLM3_127_b2_sep16_scaffold_1964_2

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comp(529..738)
DNA (210bp) protein (70aa)
Ribosomal protein L31 Tax=uncultured microorganism RepID=F8UI54_9ZZZZ
Ribosomal protein L31 {ECO:0000313|EMBL:AEI30711.1}; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
50S ribosomal protein L31
PLM3_127_b2_sep16_scaffold_1964_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1151..2359)
DNA (1209bp) protein (403aa)
coproporphyrinogen III oxidase Tax=Xanthomonas arboricola RepID=UPI0002FA51EB
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:GAN45382.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
coproporphyrinogen III oxidase
PLM3_127_b2_sep16_scaffold_1964_4
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2369..2953)
DNA (585bp) protein (195aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (EC:3.6.1.15)
NTP phosphatase Tax=Thioalkalivibrio sp. HL-Eb18 RepID=UPI000368A7FD
PLM3_127_b2_sep16_scaffold_1964_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2961..3677)
DNA (717bp) protein (239aa)
ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Ribonuclease PH Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BXG1_NITHN
PLM3_127_b2_sep16_scaffold_1964_6

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comp(3798..4595)
DNA (798bp) protein (266aa)
Protein serine/threonine phosphatase (Fragment) Tax=uncultured microorganism RepID=F8UHG9_9ZZZZ
Protein serine/threonine phosphatase {ECO:0000313|EMBL:AEI30476.1}; Flags: Fragment;; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
serine/threonine protein phosphatase
PLM3_127_b2_sep16_scaffold_1964_7

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4606..5460
DNA (855bp) protein (285aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1B888_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD64668.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1964_8
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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comp(5492..7219)
DNA (1728bp) protein (576aa)
sensor histidine kinase protein (EC:2.7.13.3)
Adenylate/guanylate cyclase Tax=Ahrensia sp. R2A130 RepID=E0MS13_9RHOB
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_127_b2_sep16_scaffold_1964_9

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7610..8260
DNA (651bp) protein (217aa)
Guanylate kinase {ECO:0000313|EMBL:EQD53077.1}; EC=2.7.4.8 {ECO:0000313|EMBL:EQD53077.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Guanylate kinase (Fragment) Tax=mine drainage metagenome RepID=T1A7Y0_9ZZZZ
guanylate kinase
PLM3_127_b2_sep16_scaffold_1964_10

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8335..8613
DNA (279bp) protein (93aa)
RNA polymerase, omega subunit Tax=mine drainage metagenome RepID=T1AI95_9ZZZZ
RNA polymerase, omega subunit {ECO:0000313|EMBL:EQD60221.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpoZ; DNA-directed RNA polymerase subunit omega
PLM3_127_b2_sep16_scaffold_1964_11
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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8664..10817
DNA (2154bp) protein (718aa)
GTP diphosphokinase (EC:2.7.6.5)
GTP diphosphokinase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQN0_THISH
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM3_127_b2_sep16_scaffold_1964_12
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10837..11220
DNA (384bp) protein (128aa)
endoribonuclease Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036374E1
Endoribonuclease L-PSP family protein
Endoribonuclease L-PSP family protein {ECO:0000313|EMBL:ACO76540.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
PLM3_127_b2_sep16_scaffold_1964_13
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11223..13295
DNA (2073bp) protein (691aa)
ATP-dependent DNA helicase RecG Tax=Pseudomonas alcaligenes OT 69 RepID=U3HG83_PSEAC
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EQM69820.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
recG; ATP-dependent DNA helicase RecG
PLM3_127_b2_sep16_scaffold_1964_14
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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13292..14233
DNA (942bp) protein (314aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
4-hydroxybenzoate polyprenyltransferase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036F17CB
4-hydroxybenzoate polyprenyltransferase
PLM3_127_b2_sep16_scaffold_1964_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14215..14598)
DNA (384bp) protein (128aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI00036A5047
competence protein F
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying 15 items

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