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PLM3_127_b2_sep16_scaffold_15954

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_15954_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2..214)
DNA (213bp) protein (71aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(211..1071)
DNA (861bp) protein (287aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Frankia sp. (strain EuI1c) RepID=E3J9T6_FRASU bin=16ft_combo_ws3_JS1 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase sigma24 factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1258..2079)
DNA (822bp) protein (274aa)
Outer membrane protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG49_THIDA bin=16ft_combo_ws3_JS1 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2206..2937
DNA (732bp) protein (244aa)
Possible integral membrane c-type cytochrome biogenesis protein dipz Tax=Plesiocystis pacifica SIR-1 RepID=A6G615_9DELT bin=16ft_combo_ws3_JS1 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2948..6556
DNA (3609bp) protein (1203aa)
Transcription-repair coupling factor Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RMB9_MOOTA bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transcription-repair coupling factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7301..8422
DNA (1122bp) protein (374aa)
Peptidyl-prolyl cis-trans isomerase domain protein Tax=Desulfovibrio RepID=D9YAP1_9DELT bin=16ft_combo_ws3_JS1 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

8794..9528
DNA (735bp) protein (245aa)
Efflux transporter, RND family, MFP subunit Tax=Azoarcus sp. KH32C RepID=H0PRZ8_9RHOO
efflux transporter, RND family, MFP subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3_127_b2_sep16_scaffold_15954_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9525..10253
DNA (729bp) protein (243aa)
ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] bin=bin9_gal15 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
ABC transporter related protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10258..11466
DNA (1209bp) protein (403aa)
hypothetical protein; K02004 putative ABC transport system permease protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=uncultured Thiohalocapsa sp. PB-PSB1 genus=Thiohalocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
antimicrobial peptide ABC transporter permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11463..12665
DNA (1203bp) protein (401aa)
antimicrobial peptide ABC transporter permease bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
antimicrobial peptide ABC transporter permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_127_b2_sep16_scaffold_15954_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12677..13015)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Rhodothermus marinus RepID=D0MIR3_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
HAF family extracellular repeat-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 11 items

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