ggKbase home page

PLM3_127_b2_sep16_scaffold_12956

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_12956_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1225)
DNA (1224bp) protein (408aa)
His Kinase A (Phosphoacceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/GAF domain protein Tax=Sinorhizobium meliloti GR4 RepID=M4IKA1_RHIML
His Kinase A (phosphoacceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/GAF domain protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_12956_2
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1207..3336)
DNA (2130bp) protein (710aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
UPI0003CF698B related cluster Tax=unknown RepID=UPI0003CF698B
His Kinase A (phosphoacceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/GAF domain protein
PLM3_127_b2_sep16_scaffold_12956_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


3579..4802
DNA (1224bp) protein (408aa)
Signal recognition particle protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
signal recognition particle protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


4841..5092
DNA (252bp) protein (84aa)
30S ribosomal protein S16 bin=GWC2_Methylomirabilis_70_24 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpsP; ribosomal protein s16-like protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5099..5623
DNA (525bp) protein (175aa)
Ribosome maturation factor RimM bin=GWC2_Methylomirabilis_70_24 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
16S rRNA processing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5653..6186
DNA (534bp) protein (178aa)
tRNA (guanine-N(1)-)-methyltransferase bin=GWF2_Methylomirabilis_70_14 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (guanine-N1)-methyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists


6261..6635
DNA (375bp) protein (125aa)
50S ribosomal protein L19 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplS; 50S ribosomal protein L19
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_12956_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6750..7283
DNA (534bp) protein (178aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII bin=GWC2_Methylomirabilis_70_24 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7287..7670
DNA (384bp) protein (128aa)
UPF0102 protein Glov_2230 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
endonuclease
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_12956_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8264..8452
DNA (189bp) protein (63aa)
isochorismatase hydrolase bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_12956_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8486..9415
DNA (930bp) protein (310aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydrodipicolinate synthetase family protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_12956_12
GWF2_WWE1X_40_14_curated, WWE1X, Bacteria

Not on your lists

comp(9412..10113)
DNA (702bp) protein (234aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
Predicted protein bin=GWF2_WWE1_40_14 species=Populus trichocarpa genus=Populus taxon_order=Malpighiales taxon_class=unknown phylum=Streptophyta tax=GWF2_WWE1_40_14 organism_group=WWE1
Tax=GWF2_WWE1X_40_14_curated
PLM3_127_b2_sep16_scaffold_12956_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10320..11555
DNA (1236bp) protein (412aa)
Glutamate-1-semialdehyde 2,1-aminomutase bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aminotransferase class-III
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12956_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11579..12889
DNA (1311bp) protein (437aa)
amino acid/amide ABC transporter substrate-binding protein, HAAT family bin=bin7_NC10_sister species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_12956_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12889..13686
DNA (798bp) protein (266aa)
ABC transporter related bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_12956_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13686..14393
DNA (708bp) protein (236aa)
ABC transporter related protein bin=GWF2_Methylomirabilis_70_14 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_12956_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14399..15034
DNA (636bp) protein (212aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 17 items

View Taxonomy