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PLM1_100_b1_sep16_scaffold_2927

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_2927_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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3..980
DNA (978bp) protein (326aa)
tyrosine phenol-lyase (EC:4.1.99.2)
L-cysteine desulfhydrase Tax=Bacillus sp. 10403023 RepID=UPI0002886307
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_2927_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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986..1318
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_2927_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1315..2052
DNA (738bp) protein (246aa)
hypothetical protein Tax=Anaeromusa acidaminophila RepID=UPI00037C7039
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_2927_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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2055..2801
DNA (747bp) protein (249aa)
3-ketoacyl-ACP reductase Tax=Bacillus sp. AP8 RepID=UPI0003103D34
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_2927_5
unknown

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comp(2798..3157)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_2927_6
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

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3360..3917
DNA (558bp) protein (186aa)
ATP-dependent protease Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEFE1C
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
clpX; ATP-dependent protease ATP-binding subunit
PLM1_100_b1_sep16_scaffold_2927_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4023..4331
DNA (309bp) protein (103aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_2927_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4383..4721
DNA (339bp) protein (113aa)
DNA or RNA helicase of superfamily II Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RK3_RHOP5
superfamily II DNA/RNA helicase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM1_100_b1_sep16_scaffold_2927_9
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4670..5872)
DNA (1203bp) protein (401aa)
Signal transduction histidine kinase bin=GWA2_OP3_52_12 species=Moorea producens genus=Moorea taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
response regulator receiver sensor hybrid histidine kinase
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM1_100_b1_sep16_scaffold_2927_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5915..7558)
DNA (1644bp) protein (548aa)
PAS sensor protein bin=GWD2_Deltaproteobacteria_55_8 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
two-component hybrid sensor and regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_2927_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(7564..8004)
DNA (441bp) protein (147aa)
CheY-like response regulator Tax=Candidatus Nitrospira defluvii RepID=D8PHL0_9BACT
CheY-like response regulator
CheY-like response regulator {ECO:0000313|EMBL:CBK42747.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM1_100_b1_sep16_scaffold_2927_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8027..10099)
DNA (2073bp) protein (691aa)
putative sensor histidine kinase (EC:2.7.13.3)
Putative Sensor histidine kinase Tax=Candidatus Nitrospira defluvii RepID=D8PHK9_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_2927_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10450..10566
DNA (117bp) protein (39aa)
DNA or RNA helicase of superfamily II Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RK3_RHOP5
superfamily II DNA/RNA helicase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying 13 items

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