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PLM4_90_b1_sep16_scaffold_1338

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_1338_1
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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comp(3..110)
DNA (108bp) protein (36aa)
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_1338_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(125..889)
DNA (765bp) protein (255aa)
imidazole glycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LTH2_SYNAS
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_1338_3
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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comp(967..4167)
DNA (3201bp) protein (1067aa)
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQN7_SYNAS
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_1338_trna_1
unknown

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4329..4399
DNA (71bp)
transferRNA Gln
PLM4_90_b1_sep16_scaffold_1338_trna_2
unknown

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4486..4558
DNA (73bp)
transferRNA Glu
PLM4_90_b1_sep16_scaffold_1338_4
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

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comp(4883..6712)
DNA (1830bp) protein (610aa)
PAS/PAC sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDW2_GEOUR
multi-sensor signal transduction histidine kinase
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_1338_5
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7296..7430)
DNA (135bp) protein (45aa)
Uncharacterized protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CE19_DESTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM27810.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM4_90_b1_sep16_scaffold_1338_6
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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comp(8034..8315)
DNA (282bp) protein (94aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_1338_7
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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comp(8312..8593)
DNA (282bp) protein (94aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_1338_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists


comp(8595..8819)
DNA (225bp) protein (75aa)
30S ribosomal protein S18 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rpsR; 30S ribosomal protein S18
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_1338_9
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(8846..9259)
DNA (414bp) protein (138aa)
Single-stranded DNA-binding protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
single-strand binding protein family
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_1338_10
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists


comp(9261..9617)
DNA (357bp) protein (119aa)
30S ribosomal protein S6 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
rpsF; 30S ribosomal protein S6
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_1338_trna_3
unknown

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9983..10056
DNA (74bp)
transferRNA Ile
PLM4_90_b1_sep16_scaffold_1338_trna_4
unknown

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10192..10264
DNA (73bp)
transferRNA Ala
PLM4_90_b1_sep16_scaffold_1338_11
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

10547..10873
DNA (327bp) protein (109aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Displaying 15 items

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