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PLM4_90_b1_sep16_scaffold_356

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_356_1
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(1..846)
DNA (846bp) protein (282aa)
Hydrogenase maturation protein bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypF; [NiFe] hydrogenase maturation protein HypF
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_2
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(850..1491)
DNA (642bp) protein (214aa)
Hydrogenase accessory protein HypB bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypB; hydrogenase accessory protein HypB
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_356_3
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(1520..1867)
DNA (348bp) protein (116aa)
Probable hydrogenase nickel incorporation protein HypA bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypA; hydrogenase nickel insertion protein HypA
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_4
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(1815..2126)
DNA (312bp) protein (104aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_5
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(2123..2527)
DNA (405bp) protein (135aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_356_6
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

2590..3693
DNA (1104bp) protein (368aa)
ribD; riboflavin biosynthesis bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase RibD (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_356_7
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(3879..4883)
DNA (1005bp) protein (335aa)
Coenzyme PQQ synthesis protein, putative bin=GWD2_Nitrospirae-related_57_8 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
coenzyme PQQ synthesis protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(4946..6373)
DNA (1428bp) protein (476aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_9
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(6363..6773)
DNA (411bp) protein (137aa)
id=3072808 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_10
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(6760..7962)
DNA (1203bp) protein (401aa)
HEAT-like repeat-containing protein bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_356_11
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(8001..8279)
DNA (279bp) protein (93aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_12
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(8279..9058)
DNA (780bp) protein (260aa)
Twin arginine-targeting protein translocase TatC bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
tatC; twin arginine-targeting protein translocase TatC
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_13
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9045..9521)
DNA (477bp) protein (159aa)
Twin-arginine translocation protein, TatB subunit Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SQN5_9DELT
tatB; twin arginine-targeting protein translocase TatB
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9530..10315)
DNA (786bp) protein (262aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_15
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10507..11274
DNA (768bp) protein (256aa)
cAMP phosphodiesterases class-II:metallo-beta-lactamase superfamily bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
beta-lactamase
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_90_b1_sep16_scaffold_356_16
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

11403..11735
DNA (333bp) protein (111aa)
Thioredoxin bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
trx; thioredoxin
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_17
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists


11815..13134
DNA (1320bp) protein (440aa)
Signal recognition particle protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ffh; signal recognition particle protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_18
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

13204..14247
DNA (1044bp) protein (348aa)
Heat-inducible transcription repressor HrcA bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hrcA; heat-inducible transcription repressor HrcA
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_19
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

14244..14843
DNA (600bp) protein (200aa)
Protein GrpE bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
grpE; co-chaperone GrpE
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_356_20
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

14845..16779
DNA (1935bp) protein (645aa)
Chaperone protein DnaK bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dnaK; chaperone protein DnaK
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_21
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

16776..17873
DNA (1098bp) protein (366aa)
Chaperone protein DnaJ bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dnaJ1; chaperone protein DnaJ
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_22
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

18338..18496
DNA (159bp) protein (53aa)
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_356_23
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

18881..19225
DNA (345bp) protein (115aa)
Ribosomal RNA small subunit methyltransferase E bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ribosomal RNA small subunit methyltransferase E
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_356_24
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(19222..19386)
DNA (165bp) protein (55aa)
id=3843312 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_356_25
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(19538..20335)
DNA (798bp) protein (266aa)
YihY family protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
yihY; YihY family protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_356_26
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(20371..21750)
DNA (1380bp) protein (460aa)
GTPase Der bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
engA; ribosome-associated GTPase EngA
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_27
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(21765..21950)
DNA (186bp) protein (62aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YFN5_9DELT
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_356_28
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

22098..22481
DNA (384bp) protein (128aa)
Holo-(acyl-carrier-protein) synthase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_356_29
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

22487..24046
DNA (1560bp) protein (520aa)
Bifunctional NAD(P)H-hydrate repair enzyme Nnr bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
YjeF family protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_356_30
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

24039..24761
DNA (723bp) protein (241aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=CG_Nitrosp_02
Displaying items 1-30 of 44 in total

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