ggKbase home page

PLM4_90_b1_sep16_scaffold_533

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_533_1
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

206..853
DNA (648bp) protein (216aa)
Phosphoglycerate mutase bin=GWB2_Nitrospirae_rel_47_37 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Phosphoglycerate mutase
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_533_2
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

1152..3134
DNA (1983bp) protein (661aa)
Hemin receptor bin=GWC2_CP_Nitrospirae-rel_42_7 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
outer membrane B12 receptor
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_533_3
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

3139..3897
DNA (759bp) protein (253aa)
Putative TonB family C-domain protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Campylobacter hominis genus=Campylobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
protein TonB
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_533_4
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(3881..4906)
DNA (1026bp) protein (342aa)
Secreted protein bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_533_trna_2
unknown

Not on your lists

comp(5001..5075)
DNA (75bp)
transferRNA Glu
PLM4_90_b1_sep16_scaffold_533_trna_1
unknown

Not on your lists

comp(5122..5194)
DNA (73bp)
transferRNA Lys
PLM4_90_b1_sep16_scaffold_533_5
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(5233..5880)
DNA (648bp) protein (216aa)
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase, putative bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_533_6
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(5835..7010)
DNA (1176bp) protein (392aa)
Aconitate hydratase, putative bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
aconitate hydratase, putative, Aquifex type
Tax=GWB2_Nitrospirae_47_37_curated
PLM4_90_b1_sep16_scaffold_533_7
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

7111..8367
DNA (1257bp) protein (419aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_533_8
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

8485..9393
DNA (909bp) protein (303aa)
Diaminopimelate epimerase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dapF; diaminopimelate epimerase
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_9
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

9390..9686
DNA (297bp) protein (99aa)
response regulator receiver protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_533_10
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

9700..10572
DNA (873bp) protein (291aa)
Dihydrodipicolinate synthase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dapA; dihydrodipicolinate synthase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_533_11
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(10732..11529)
DNA (798bp) protein (266aa)
bioD; dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_533_12
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(11534..12664)
DNA (1131bp) protein (377aa)
bioF; 8-amino-7-oxononanoate synthase (EC:2.3.1.47)
Putative 8-amino-7-oxononanoate synthase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_533_13
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

12873..13292
DNA (420bp) protein (140aa)
ATP synthase subunit B' (EC:3.6.3.14)
ATP synthase subunit b bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_533_14
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

13289..13912
DNA (624bp) protein (208aa)
atpF; ATP synthase F0 subunit B (EC:3.6.3.14)
ATP synthase subunit b bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_533_15
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

13909..14448
DNA (540bp) protein (180aa)
atpH; ATP synthase F1 subunit delta (EC:3.6.3.14)
ATP synthase subunit delta bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_533_16
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

14453..15976
DNA (1524bp) protein (508aa)
atpA; ATP synthase F1 subuit alpha (EC:3.6.3.14)
ATP synthase subunit alpha Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=ATPA_THEYD
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_533_17
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

16003..16884
DNA (882bp) protein (294aa)
atpG; ATP synthase F1 subuit gamma (EC:3.6.3.14)
ATP synthase gamma chain bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_533_18
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

17259..18218
DNA (960bp) protein (320aa)
atpD; ATP synthase F1 subuit beta (EC:3.6.3.14)
ATP synthase subunit beta Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=ATPB_THEYD
Tax=RBG_16_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_19
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

18245..18652
DNA (408bp) protein (136aa)
atpC; F0F1 ATP synthase subunit epsilon (EC:3.6.3.14)
ATP synthase epsilon chain bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_533_20
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

18843..19592
DNA (750bp) protein (250aa)
SAM-dependent methyltransferase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
SAM-dependent methyltransferase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_533_21
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

19904..20482
DNA (579bp) protein (193aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEK5_ANADF
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_22
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

20558..21436
DNA (879bp) protein (293aa)
Tyrosine recombinase XerD bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
xerD; tyrosine recombinase XerD
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_23
unknown

Not on your lists

21585..21830
DNA (246bp) protein (82aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_533_24
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

21891..24314
DNA (2424bp) protein (808aa)
ATP-dependent protease La bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ATP-dependent protease La
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_533_25
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(24527..25993)
DNA (1467bp) protein (489aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00037E9FDB
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_26
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(26006..26464)
DNA (459bp) protein (153aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B6A8EC
paps; putative phosphoadenosine phosphosulfate reductase
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_533_27
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

27346..28371
DNA (1026bp) protein (342aa)
Undecaprenyl-phosphate galactosephosphotransferase Tax=Thermobrachium celere DSM 8682 RepID=R7RNW7_9CLOT
capsular polysaccharide biosynthsis protein
Tax=GWA2_Nitrospirae_42_11_curated
PLM4_90_b1_sep16_scaffold_533_28
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

29157..29420
DNA (264bp) protein (88aa)
Lipopolysaccharide biosynthesis protein bin=GWC2_Deltaproteobacteria_56_8 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=GWA2_Nitrospirae_42_11_curated
Displaying items 1-30 of 31 in total

View Taxonomy