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PLM4_90_b1_sep16_scaffold_608

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_608_1
unknown

Not on your lists

54..167
DNA (114bp) protein (38aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_608_2
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(239..664)
DNA (426bp) protein (142aa)
Type IV pilin bin=GWF2_Nitrospirae_44_13 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
pilin
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_608_3
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(684..1616)
DNA (933bp) protein (311aa)
Bactoprenol glucosyl transferase; CPS-53 (KpLE1) prophage bin=GWF2_Nitrospirae_44_13 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
yfdH; bactoprenol glucosyl transferase; CPS-53 (KpLE1) prophage
Tax=GWF2_Nitrospirae_44_13_curated
PLM4_90_b1_sep16_scaffold_608_4
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1621..2274)
DNA (654bp) protein (218aa)
Uncharacterized protein Tax=Calothrix sp. PCC 6303 RepID=K9V2J1_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ02036.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
PLM4_90_b1_sep16_scaffold_608_5
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(2276..3415)
DNA (1140bp) protein (380aa)
DegT/DnrJ/EryC1/StrS aminotransferase bin=GWF2_Nitrospirae_44_13 species=Gillisia limnaea genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=GWF2_Nitrospirae_44_13_curated
PLM4_90_b1_sep16_scaffold_608_6
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(3419..4414)
DNA (996bp) protein (332aa)
Nucleoside-diphosphate-sugar epimerase bin=GWF2_Nitrospirae_44_13 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
NAD-dependent epimerase/dehydratase
Tax=RBG_16_RIF03_38_10_curated
PLM4_90_b1_sep16_scaffold_608_7
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(4411..5520)
DNA (1110bp) protein (370aa)
Pleiotropic regulatory protein bin=GWF2_Nitrospirae_44_13 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=RBG_16_RIF03_38_10_curated
PLM4_90_b1_sep16_scaffold_608_8
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(5517..6182)
DNA (666bp) protein (222aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase bin=GWF2_Nitrospirae_44_13 species=Glaciecola chathamensis genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
acetyltransferase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_9
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(6179..7195)
DNA (1017bp) protein (339aa)
Oxidoreductase domain protein bin=GWF2_Nitrospirae_44_13 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
oxidoreductase domain-containing protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_10
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(7182..9005)
DNA (1824bp) protein (608aa)
Secreted protein bin=GWF2_Nitrospirae_44_13 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_11
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(9071..9586)
DNA (516bp) protein (172aa)
Fimbrial protein bin=GWF2_Nitrospirae_44_13 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ppdD; prepilin peptidase dependent protein D
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_12
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

comp(9674..10237)
DNA (564bp) protein (188aa)
Fimbrial protein bin=GWF2_Nitrospirae_44_13 species=uncultured Nitrospirae bacterium MY3-11A genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type IV pilin
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_13
Smithella sp. D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10533..10994)
DNA (462bp) protein (154aa)
General secretion pathway protein GspG {ECO:0000313|EMBL:KFZ44664.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. D17.;"
General secretion pathway protein G bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Nitrospirae bacterium MY4-5C genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
gspG; pseudopilin, cryptic, general secretion pathway
PLM4_90_b1_sep16_scaffold_608_14
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

11161..11856
DNA (696bp) protein (232aa)
DNA repair protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
DNA repair protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_608_15
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

11888..12493
DNA (606bp) protein (202aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH bin=GWF2_Nitrospirae_44_13 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_608_16
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

12582..13850
DNA (1269bp) protein (423aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_608_17
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

14097..14351
DNA (255bp) protein (85aa)
Phosphoribosylamine--glycine ligase bin=GWF2_Nitrospirae_44_13 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
phosphoribosylaminoimidazole carboxylase catalytic subunit
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_608_18
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

14315..14503
DNA (189bp) protein (63aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
Phosphoribosylamine--glycine ligase bin=GWF2_Nitrospirae_44_13 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_608_19
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

14500..15345
DNA (846bp) protein (282aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Marichromatium purpuratum genus=Marichromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_608_20
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(15378..15704)
DNA (327bp) protein (109aa)
RNP-1 like RNA-binding protein bin=GWF2_Nitrospirae_44_13 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RNP-1 like RNA-binding protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_608_21
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

15838..16470
DNA (633bp) protein (211aa)
Sua5/YciO/YrdC/YwlC family protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Sua5/YciO/YrdC/YwlC family protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_608_22
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

16941..17837
DNA (897bp) protein (299aa)
Periplasmic binding protein bin=GWC2_Nitrospirae-rel_56_14 species=Methanospirillum hungatei genus=Methanospirillum taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Fe3+-siderophore ABC transporter substrate-binding protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_608_23
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

17825..18790
DNA (966bp) protein (322aa)
Transport system permease protein bin=GWC2_Nitrospirae_57_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
transporter permease
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_608_24
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

18774..19394
DNA (621bp) protein (207aa)
ABC transporter related bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
ABC transporter
Tax=RBG_13_Nitrospirae_39_12_curated
Displaying 24 items

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