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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 201-250 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_8130
Species: R_Rokubacteria_73_56 (66.67%)
3 3233 bp 69.75 11.27 96.97
PLM1_100_coex_sep16_scaffold_4328
Phylum: Proteobacteria (60%)
5 3500 bp 70.43 13.03 96.94
PLM1_100_coex_sep16_scaffold_5836
Genus: Candidatus Entotheonella (50%)
4 3008 bp 69.81 13.07 96.94
PLM1_100_coex_sep16_scaffold_1871
Species: R_NC10_66_22 (50%)
6 5450 bp 69.39 12.50 96.94
PLM1_100_coex_sep16_scaffold_397
Domain: Bacteria (87.5%)
24 24318 bp 72.63 10.54 96.88
PLM1_100_coex_sep16_scaffold_2087
Phylum: Rokubacteria (71.43%)
7 5138 bp 74.50 10.22 96.87
PLM1_100_coex_sep16_scaffold_7330
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 2679 bp 72.79 11.87 96.86
PLM1_100_coex_sep16_scaffold_6573
Phylum: Rokubacteria (66.67%)
3 2834 bp 72.41 10.00 96.86
PLM1_100_coex_sep16_scaffold_5118
Phylum: Rokubacteria (66.67%)
6 5108 bp 72.85 9.04 96.85
PLM1_100_coex_sep16_scaffold_16501
Phylum: Rokubacteria (83.33%)
6 2557 bp 71.06 10.27 96.83
PLM1_100_coex_sep16_scaffold_5170
Domain: Bacteria (66.67%)
3 3182 bp 67.16 11.36 96.83
PLM1_100_coex_sep16_scaffold_3154
Species: R_Rokubacteria_73_56 (80%)
5 4127 bp 74.22 10.18 96.83
PLM1_100_coex_sep16_scaffold_5062
Species: R_Rokubacteria_73_56 (66.67%)
3 3213 bp 71.37 8.92 96.83
PLM1_100_coex_sep16_scaffold_2176
Phylum: Rokubacteria (100%)
5 5018 bp 71.54 11.06 96.79
PLM1_100_coex_sep16_scaffold_7212
Species: R_Rokubacteria_73_56 (75%)
4 4609 bp 70.32 12.20 96.79
PLM1_100_coex_sep16_scaffold_11253
Domain: Bacteria (100%)
3 2931 bp 70.79 8.29 96.72
PLM1_100_coex_sep16_scaffold_1146
Phylum: Proteobacteria (50%)
8 7125 bp 70.19 13.12 96.72
PLM1_100_coex_sep16_scaffold_6196
Species: RLO_Rokubacteria_71_22 (50%)
6 4749 bp 69.80 10.23 96.72
PLM1_100_coex_sep16_scaffold_1251
Species: R_Betaproteobacteria_64_14 (50%)
6 6812 bp 67.98 11.43 96.71
PLM1_100_coex_sep16_scaffold_2422
Phylum: Proteobacteria (50%)
6 4751 bp 70.79 11.30 96.67
PLM1_100_coex_sep16_scaffold_9805
Phylum: Rokubacteria (75%)
4 4044 bp 70.60 11.13 96.66
PLM1_100_coex_sep16_scaffold_2697
Domain: Bacteria (80%)
5 4491 bp 72.63 9.39 96.66
PLM1_100_coex_sep16_scaffold_5285
Phylum: Proteobacteria (60%)
5 3151 bp 71.34 15.57 96.64
PLM1_100_coex_sep16_scaffold_7634
Phylum: Rokubacteria (50%)
8 4517 bp 71.02 11.82 96.63
PLM1_100_coex_sep16_scaffold_3222
Species: R_Rokubacteria_73_56 (62.5%)
8 5505 bp 72.03 9.97 96.62
PLM1_100_coex_sep16_scaffold_5798
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 3017 bp 65.56 10.69 96.55
PLM1_100_coex_sep16_scaffold_12834
Species: R_Rokubacteria_73_56 (75%)
4 3219 bp 72.10 9.51 96.55
PLM1_100_coex_sep16_scaffold_3461
Phylum: Rokubacteria (66.67%)
6 6408 bp 69.83 9.90 96.54
PLM1_100_coex_sep16_scaffold_4104
Species: R_Rokubacteria_73_56 (80%)
5 6638 bp 69.70 11.52 96.54
PLM1_100_coex_sep16_scaffold_373
Phylum: Rokubacteria (93.33%)
15 16739 bp 70.99 12.04 96.53
PLM1_100_coex_sep16_scaffold_2608
Domain: Bacteria (80%)
5 5756 bp 71.47 10.29 96.53
PLM1_100_coex_sep16_scaffold_2108
Phylum: Rokubacteria (85.71%)
14 10826 bp 69.90 10.78 96.52
PLM1_100_coex_sep16_scaffold_277
Species: GWA2_Rokubacteria_73_35_curated (50%)
18 16002 bp 71.33 11.07 96.51
PLM1_100_coex_sep16_scaffold_1355
Phylum: Rokubacteria (75%)
8 8189 bp 71.16 10.15 96.50
PLM1_100_coex_sep16_scaffold_2651
Species: Calothrix parietina (50%)
2 4527 bp 71.75 12.82 96.49
PLM1_100_coex_sep16_scaffold_4038
Domain: Bacteria (100%)
9 6483 bp 70.91 10.74 96.48
PLM1_100_coex_sep16_scaffold_1134
Domain: Bacteria (100%)
7 7171 bp 69.39 11.48 96.43
PLM1_100_coex_sep16_scaffold_251
Phylum: Rokubacteria (88.89%)
18 22014 bp 71.18 12.14 96.40
PLM1_100_coex_sep16_scaffold_2811
Species: RLO_Rokubacteria_71_22 (50%)
4 4388 bp 72.47 10.05 96.40
PLM1_100_coex_sep16_scaffold_1030
Phylum: Rokubacteria (57.14%)
7 8850 bp 75.45 10.53 96.37
PLM1_100_coex_sep16_scaffold_3616
Species: GWA2_Rokubacteria_73_35_curated (60%)
5 3832 bp 69.99 10.26 96.37
PLM1_100_coex_sep16_scaffold_4258
Species: R_Rokubacteria_71_18 (100%)
4 3521 bp 69.92 11.29 96.36
PLM1_100_coex_sep16_scaffold_6359
Phylum: Proteobacteria (50%)
4 2880 bp 72.29 8.65 96.35
PLM1_100_coex_sep16_scaffold_3322
Species: GWA2_Rokubacteria_70_23_curated (50%)
4 4004 bp 71.00 12.33 96.35
PLM1_100_coex_sep16_scaffold_11561
Phylum: Rokubacteria (50%)
4 4335 bp 71.76 9.31 96.33
PLM1_100_coex_sep16_scaffold_6470
Species: RLO_Rokubacteria_71_22 (66.67%)
3 2856 bp 74.54 13.18 96.32
PLM1_100_coex_sep16_scaffold_3160
Species: R_Rokubacteria_73_56 (50%)
10 4123 bp 66.24 13.02 96.31
PLM1_100_coex_sep16_scaffold_2931
Domain: Bacteria (100%)
6 6180 bp 70.29 11.99 96.31
PLM1_100_coex_sep16_scaffold_1090
Domain: Bacteria (100%)
15 15672 bp 71.82 11.67 96.31
PLM1_100_coex_sep16_scaffold_4606
Species: GWA2_Rokubacteria_73_35_curated (57.14%)
7 5677 bp 69.91 9.49 96.28
Displaying items 201-250 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.