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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 251-300 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_2514
Domain: Bacteria (91.67%)
12 8792 bp 71.59 9.84 93.32
PLM1_100_coex_sep16_scaffold_1732
Phylum: Proteobacteria (57.14%)
7 5715 bp 68.91 12.91 93.33
PLM1_100_coex_sep16_scaffold_6477
Phylum: Rokubacteria (100%)
4 2854 bp 69.94 11.04 93.34
PLM1_100_coex_sep16_scaffold_1261
Species: R_Rokubacteria_73_56 (55.56%)
9 6791 bp 70.53 10.96 93.34
PLM1_100_coex_sep16_scaffold_1203
Species: GWA2_Rokubacteria_73_35_curated (83.33%)
6 6935 bp 67.56 9.45 93.35
PLM1_100_coex_sep16_scaffold_1196
Phylum: Rokubacteria (66.67%)
12 9594 bp 72.46 10.88 93.37
PLM1_100_coex_sep16_scaffold_7583
Domain: Bacteria (85.71%)
7 6763 bp 69.87 10.20 93.38
PLM1_100_coex_sep16_scaffold_1405
Species: RBG_16_Armatimonadetes_67_12_curated (50%)
6 6384 bp 69.42 11.91 93.42
PLM1_100_coex_sep16_scaffold_4663
Phylum: Rokubacteria (71.43%)
7 4903 bp 70.04 10.62 93.43
PLM1_100_coex_sep16_scaffold_4656
Species: GWC2_Syntrophus_56_31_curated (50%)
2 3360 bp 66.82 10.36 93.48
PLM1_100_coex_sep16_scaffold_4669
Domain: Bacteria (77.78%)
9 6360 bp 72.97 10.99 93.49
PLM1_100_coex_sep16_scaffold_4156
Species: R_Rokubacteria_73_56 (75%)
4 3565 bp 68.75 11.32 93.49
PLM1_100_coex_sep16_scaffold_6565
Species: R_Rokubacteria_71_18 (50%)
4 2836 bp 72.43 11.21 93.51
PLM1_100_coex_sep16_scaffold_3332
Phylum: Rokubacteria (83.33%)
6 3999 bp 72.14 9.56 93.55
PLM1_100_coex_sep16_scaffold_5331
Phylum: Rokubacteria (85.71%)
7 5277 bp 70.65 9.38 93.58
PLM1_100_coex_sep16_scaffold_11297
Species: R_Rokubacteria_73_56 (50%)
4 3145 bp 72.53 10.06 93.58
PLM1_100_coex_sep16_scaffold_4447
Phylum: Rokubacteria (50%)
6 4266 bp 72.81 11.15 93.60
PLM1_100_coex_sep16_scaffold_6163
Domain: Bacteria (83.33%)
6 5157 bp 72.04 8.55 93.60
PLM1_100_coex_sep16_scaffold_3711
Class: Betaproteobacteria (50%)
4 3777 bp 71.14 9.69 93.65
PLM1_100_coex_sep16_scaffold_3885
Species: R_Rokubacteria_73_56 (71.43%)
7 5371 bp 72.56 9.22 93.73
PLM1_100_coex_sep16_scaffold_2400
Phylum: Proteobacteria (71.43%)
7 5869 bp 69.64 13.88 93.75
PLM1_100_coex_sep16_scaffold_2897
Phylum: Rokubacteria (54.55%)
11 6497 bp 70.42 11.57 93.77
PLM1_100_coex_sep16_scaffold_13744
Phylum: Proteobacteria (50%)
4 2748 bp 69.61 12.50 93.78
PLM1_100_coex_sep16_scaffold_6293
Species: R_Rokubacteria_73_56 (66.67%)
3 2895 bp 71.54 9.69 93.78
PLM1_100_coex_sep16_scaffold_4823
Phylum: Rokubacteria (80%)
5 3297 bp 75.80 8.33 93.81
PLM1_100_coex_sep16_scaffold_2154
Species: R_Rokubacteria_73_56 (80%)
5 5038 bp 72.27 11.94 93.85
PLM1_100_coex_sep16_scaffold_442
Species: R_Rokubacteria_73_56 (50%)
12 12126 bp 70.11 12.12 93.86
PLM1_100_coex_sep16_scaffold_821
Domain: Bacteria (88.89%)
9 9096 bp 70.62 9.42 93.93
PLM1_100_coex_sep16_scaffold_4192
Species: R_Rokubacteria_73_56 (50%)
6 3976 bp 70.65 11.88 93.94
PLM1_100_coex_sep16_scaffold_3561
Phylum: Rokubacteria (100%)
5 6543 bp 68.88 12.43 93.95
PLM1_100_coex_sep16_scaffold_3664
Species: GWA2_Rokubacteria_73_35_curated (50%)
4 3803 bp 71.86 10.10 93.95
PLM1_100_coex_sep16_scaffold_4304
Species: R_Rokubacteria_68_19 (50%)
4 3506 bp 68.94 10.57 93.95
PLM1_100_coex_sep16_scaffold_7779
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 2599 bp 69.95 11.25 93.96
PLM1_100_coex_sep16_scaffold_2696
Species: R_Rokubacteria_73_56 (60%)
5 4492 bp 71.93 11.85 93.97
PLM1_100_coex_sep16_scaffold_3580
Species: R_Rokubacteria_73_56 (50%)
6 3853 bp 70.65 11.76 93.98
PLM1_100_coex_sep16_scaffold_4175
Domain: Bacteria (66.67%)
3 3556 bp 70.98 10.63 93.98
PLM1_100_coex_sep16_scaffold_482
Phylum: Rokubacteria (94.12%)
17 18446 bp 72.83 10.90 93.99
PLM1_100_coex_sep16_scaffold_668
Species: R_Rokubacteria_73_56 (50%)
10 9816 bp 70.70 12.03 94.01
PLM1_100_coex_sep16_scaffold_168
Phylum: Rokubacteria (60.87%)
23 22699 bp 71.92 10.94 94.02
PLM1_100_coex_sep16_scaffold_5475
Species: GWA2_Rokubacteria_70_23_curated (50%)
4 3101 bp 68.14 10.54 94.03
PLM1_100_coex_sep16_scaffold_15243
Species: RLO_Rokubacteria_71_22 (50%)
2 2864 bp 69.41 10.27 94.06
PLM1_100_coex_sep16_scaffold_993
Phylum: Rokubacteria (63.64%)
11 9613 bp 73.21 10.00 94.09
PLM1_100_coex_sep16_scaffold_1287
Domain: Bacteria (100%)
7 10815 bp 70.38 10.03 94.09
PLM1_100_coex_sep16_scaffold_5926
Phylum: Proteobacteria (60%)
5 2981 bp 70.31 10.42 94.10
PLM1_100_coex_sep16_scaffold_1136
Phylum: Rokubacteria (100%)
9 7167 bp 72.83 11.03 94.10
PLM1_100_coex_sep16_scaffold_1108
Phylum: Proteobacteria (66.67%)
6 7252 bp 70.73 10.53 94.11
PLM1_100_coex_sep16_scaffold_6596
Phylum: Proteobacteria (75%)
4 2830 bp 71.10 12.61 94.13
PLM1_100_coex_sep16_scaffold_4611
Phylum: Rokubacteria (50%)
4 4171 bp 68.81 8.85 94.15
PLM1_100_coex_sep16_scaffold_855
Domain: Bacteria (78.57%)
14 13018 bp 72.50 10.60 94.16
PLM1_100_coex_sep16_scaffold_3925
Species: R_NC10_66_22 (50%)
4 4371 bp 69.21 10.12 94.17
Displaying items 251-300 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.