ggKbase home page

PLM3_60_b1_sep16_scaffold_4347

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_4347_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2..643)
DNA (642bp) protein (214aa)
udg; UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8P8I1_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

861..1271
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8I0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1333..2955
DNA (1623bp) protein (541aa)
putative spermidine synthase modulated with MFS-type transporter (EC:2.5.1.16)
Putative Spermidine synthase modulated with MFS-type transporter Tax=Candidatus Nitrospira defluvii RepID=D8P8H9_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3149..3640
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8H8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3764..4096)
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8H7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43809.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4347_6
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(4364..4711)
DNA (348bp) protein (116aa)
4Fe-4S ferredoxin Tax=Candidatus Nitrospira defluvii RepID=D8P8H6_9BACT
yfhL; 4Fe-4S ferredoxin
4Fe-4S ferredoxin {ECO:0000313|EMBL:CBK43808.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4347_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4939..5433
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8H5_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5488..5805
DNA (318bp) protein (106aa)
Putative 2Fe-2S ferredoxin Tax=Candidatus Nitrospira defluvii RepID=D8P8H4_9BACT
putative 2Fe-2S ferredoxin
Putative 2Fe-2S ferredoxin {ECO:0000313|EMBL:CBK43806.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4347_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5890..6249
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8H3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_10
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

6246..7088
DNA (843bp) protein (281aa)
dat; d-amino-acid transaminase (EC:2.6.1.21)
D-amino-acid transaminase Tax=Candidatus Nitrospira defluvii RepID=D8P8H2_9BACT
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_4347_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7722..8915
DNA (1194bp) protein (398aa)
Transcription termination factor NusA Tax=Candidatus Nitrospira defluvii RepID=D8P8H0_9BACT
nusA; transcription termination factor NusA
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

8937..11270
DNA (2334bp) protein (778aa)
Translation initiation factor IF-2 Tax=Candidatus Nitrospira defluvii RepID=D8P8G9_9BACT
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4347_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11267..11509
DNA (243bp) protein (81aa)
Translation initiation factor IF-2 Tax=Candidatus Nitrospira defluvii RepID=D8P8G9_9BACT
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4347_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11549..11830
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8G8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12072..12488
DNA (417bp) protein (139aa)
Ribosome-binding factor A Tax=Candidatus Nitrospira defluvii RepID=D8P8G7_9BACT
rbfA; ribosome-binding factor A
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4347_16
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

12475..13284
DNA (810bp) protein (270aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B Tax=Candidatus Nitrospira defluvii RepID=D8P8G6_9BACT
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Displaying 16 items

View Taxonomy