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PLM3_60_coex_sep16_scaffold_14

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_14_1
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..885)
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2M668_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKF07608.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_2
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(878..1990)
DNA (1113bp) protein (371aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2KPH5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKF07609.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_3
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2634..4169)
DNA (1536bp) protein (512aa)
Replicative DNA helicase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S896_PHAFV
Replicative DNA helicase {ECO:0000313|EMBL:EPY02087.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
replicative DNA helicase
PLM3_60_coex_sep16_scaffold_14_4
R_Gammaproteobacteria_60_43, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4552..5916)
DNA (1365bp) protein (455aa)
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Roseovarius sp. TM1035 RepID=A6E608_9RHOB
aminotransferase class-III family protein
Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_60_43_curated
PLM3_60_coex_sep16_scaffold_14_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5948..7354)
DNA (1407bp) protein (469aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase Tax=Rhodospirillum rubrum RepID=G2TB29_RHORU
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_14_6
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7438..8220)
DNA (783bp) protein (261aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003731B2B
50S ribosomal protein L9
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_14_7
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8235..8621)
DNA (387bp) protein (129aa)
30S ribosomal protein S18 Tax=Methylobacterium RepID=UPI000370823F
rpsR; 30S ribosomal protein S18
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM3_60_coex_sep16_scaffold_14_8
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8618..9175)
DNA (558bp) protein (186aa)
30S ribosomal protein S6 Tax=Caenispirillum salinarum AK4 RepID=K9GZJ3_9PROT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
rpsF; 30S ribosomal protein S6
PLM3_60_coex_sep16_scaffold_14_9
unknown

Not on your lists

comp(9175..9786)
DNA (612bp) protein (204aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_14_10
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..10150)
DNA (375bp) protein (125aa)
DNA-binding protein {ECO:0000313|EMBL:EWY41425.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Helix-turn-helix domain protein bin=GWD2_Nitrospirae-related_57_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
XRE family transcriptional regulator
PLM3_60_coex_sep16_scaffold_14_11
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10392..11087)
DNA (696bp) protein (232aa)
Putative uncharacterized protein Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0S2_RHOVT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP71162.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
PLM3_60_coex_sep16_scaffold_14_12
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11461..12141
DNA (681bp) protein (227aa)
UPI0003CEE4A8 related cluster Tax=unknown RepID=UPI0003CEE4A8
Uncharacterized protein {ECO:0000313|EMBL:ESY64751.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_13
Leptospirillum sp. Group II 'C75', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

12279..13436
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Leptospirillum sp. Group II 'C75' RepID=U4QPG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIJ75148.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II 'C75'.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_14

Not on your lists

comp(14104..14925)
DNA (822bp) protein (274aa)
Uncharacterized protein Tax=Rhizobium fredii (strain HH103) RepID=G9AHQ7_RHIFH
Methyltransferase domain protein {ECO:0000313|EMBL:AIA11432.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15158..15934)
DNA (777bp) protein (259aa)
cya37; adenylate cyclase 3 (EC:4.6.1.1)
Putative adenylate cyclase 3 {ECO:0000313|EMBL:AFL52922.1}; EC=4.6.1.1 {ECO:0000313|EMBL:AFL52922.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Putative adenylate cyclase 3 Tax=Sinorhizobium fredii USDA 257 RepID=I3XAL6_RHIFR
PLM3_60_coex_sep16_scaffold_14_16
unknown

Not on your lists

15982..16143
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_14_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16259..17206
DNA (948bp) protein (316aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Malonyl CoA-acyl carrier protein transacylase Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HYI1_PARL1
malonyl CoA-acyl carrier protein transacylase
PLM3_60_coex_sep16_scaffold_14_18
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17519..18268
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CCC98133.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCC98133.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
3-oxoacyl-[acyl-carrier-protein] reductase Tax=Azospirillum brasilense Sp245 RepID=G8ALM1_AZOBR
3-oxoacyl-ACP synthase
PLM3_60_coex_sep16_scaffold_14_19
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18483..18719
DNA (237bp) protein (79aa)
Acyl carrier protein Tax=alpha proteobacterium BAL199 RepID=A8U1U8_9PROT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Acyl carrier protein (ACP)
PLM3_60_coex_sep16_scaffold_14_20
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18804..20066
DNA (1263bp) protein (421aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II) (KAS II) (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SEJ1_PHAFV
PLM3_60_coex_sep16_scaffold_14_21
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20205..21221
DNA (1017bp) protein (339aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN74_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI98971.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM3_60_coex_sep16_scaffold_14_22
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21259..21756)
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Rhizobium freirei PRF 81 RepID=N6U781_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86098.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21996..22730)
DNA (735bp) protein (245aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000369EF0F
peptide methionine sulfoxide reductase
PLM3_60_coex_sep16_scaffold_14_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22762..23256)
DNA (495bp) protein (165aa)
methionine sulfoxide reductase Tax=Rhizobium leguminosarum RepID=UPI000372424F
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EJC81443.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
methionine sulfoxide reductase
PLM3_60_coex_sep16_scaffold_14_25
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23415..24266)
DNA (852bp) protein (284aa)
Short-chain dehydrogenase/reductase SDR Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221V9_RHOFD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD68194.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
PLM3_60_coex_sep16_scaffold_14_26
unknown

Not on your lists

comp(24383..25072)
DNA (690bp) protein (230aa)
Streptomycin 3''-kinase {ECO:0000313|EMBL:CPR18131.1}; EC=2.7.1.87 {ECO:0000313|EMBL:CPR18131.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Streptomycin phosphotransferase Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZ82_JANMA
streptomycin 3''-kinase
PLM3_60_coex_sep16_scaffold_14_27
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25511..27376
DNA (1866bp) protein (622aa)
putative histidine kinase with PAS sensor domain and CHASE domain (EC:2.7.13.3)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000365D439
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM3_60_coex_sep16_scaffold_14_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27382..27957)
DNA (576bp) protein (192aa)
hypothetical protein Tax=Meganema perideroedes RepID=UPI0003610AF0
UPF0314 protein P409_12915 {ECO:0000256|HAMAP-Rule:MF_01514}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_29
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

28480..28788
DNA (309bp) protein (103aa)
hypothetical protein Tax=Calothrix sp. PCC 7103 RepID=UPI0002E9BB15
Fis family transcriptional regulator {ECO:0000313|EMBL:KIF35885.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_14_30
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28795..29217
DNA (423bp) protein (141aa)
Putative Class I peptide chain release factor domain protein Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EW20_9PROT
PrfB protein {ECO:0000313|EMBL:BAQ45238.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
putative Class I peptide chain release factor domain protein
Displaying items 1-30 of 93 in total

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