ggKbase home page

PLM3_60_coex_sep16_scaffold_156

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_156_1

Not on your lists

comp(1..279)
DNA (279bp) protein (93aa)
UPI0003CE3BAB related cluster Tax=unknown RepID=UPI0003CE3BAB
Uncharacterized protein {ECO:0000313|EMBL:KKL46033.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase protein
PLM3_60_coex_sep16_scaffold_156_2
unknown

Not on your lists

850..1122
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_156_3
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1052..1852)
DNA (801bp) protein (267aa)
hypothetical protein Tax=Rhizobium giardinii RepID=UPI00035F320C
Uncharacterized protein {ECO:0000313|EMBL:KEC71477.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
alpha/beta hydrolase fold protein
PLM3_60_coex_sep16_scaffold_156_4
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(2107..3681)
DNA (1575bp) protein (525aa)
Uncharacterized protein Tax=Mycobacterium smegmatis JS623 RepID=L0J4V7_MYCSM
hypothetical protein
Tax=RBG_16_KB1_OP1_55_9_curated
PLM3_60_coex_sep16_scaffold_156_5
RLO_PLX_64_10, Bacteria

Not on your lists

4541..5623
DNA (1083bp) protein (361aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003644AC0
dimethylaniline monooxygenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_156_6
RLO_PLX_64_10, Bacteria

Not on your lists

5658..6872
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EG76_9CHLR
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_156_7
Vibrio splendidus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7081..9123)
DNA (2043bp) protein (681aa)
Uncharacterized protein Tax=Vibrio splendidus RepID=A3UZG5_VIBSP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAP92103.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio splendidus 12B01.;"
PLM3_60_coex_sep16_scaffold_156_8
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9407..10876)
DNA (1470bp) protein (490aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00036FB454
Uncharacterized protein {ECO:0000313|EMBL:EPD62178.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
PLM3_60_coex_sep16_scaffold_156_9
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10873..12567)
DNA (1695bp) protein (565aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000377AAF8
Uncharacterized protein {ECO:0000313|EMBL:EPD62177.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
integral membrane protein MviN
PLM3_60_coex_sep16_scaffold_156_10
unknown

Not on your lists

comp(12577..14301)
DNA (1725bp) protein (575aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_156_11
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14754..15872)
DNA (1119bp) protein (373aa)
glycosyltransferase 28 domain Tax=Saccharopolyspora spinosa RepID=UPI000237A180
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_156_12
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(15954..16658)
DNA (705bp) protein (235aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
Undecaprenyl-phosphate galactose phosphotransferase {ECO:0000313|EMBL:ACZ43699.1}; EC=2.7.8.6 {ECO:0000313|EMBL:ACZ43699.1};; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Undecaprenyl-phosphate galactose phosphotransferase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIX9_THET1
PLM3_60_coex_sep16_scaffold_156_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16771..17904)
DNA (1134bp) protein (378aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
hypothetical protein Tax=Longispora albida RepID=UPI0003791E53
Predicted PLP-dependent enzyme possibly involved in cell wall biogenesis {ECO:0000313|EMBL:CDM66070.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM3_60_coex_sep16_scaffold_156_14
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17912..19054)
DNA (1143bp) protein (381aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036CF2D6
oxidoreductase domain-containing protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3_60_coex_sep16_scaffold_156_15
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19634..21073
DNA (1440bp) protein (480aa)
manC; mannose-1-phosphate guanylyltransferase (EC:2.7.7.22)
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:BAI76947.1}; EC=2.7.7.22 {ECO:0000313|EMBL:BAI76947.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Mannose-1-phosphate guanylyltransferase Tax=Azospirillum sp. (strain B510) RepID=D3P8G8_AZOS1
PLM3_60_coex_sep16_scaffold_156_16
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

21313..22605
DNA (1293bp) protein (431aa)
Glycosyl transferase group 1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIV8_THET1
group 1 glycosyl transferase
Tax=RBG_16_Chloroflexi_50_9_curated
PLM3_60_coex_sep16_scaffold_156_17
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22716..23702
DNA (987bp) protein (329aa)
Putative Glycoside hydrolase, family 5 Tax=Nitrolancetus hollandicus Lb RepID=I4EFX8_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KFA88303.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_156_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23847..24278)
DNA (432bp) protein (144aa)
hypothetical protein Tax=Desulfobacter curvatus RepID=UPI00037A0BDB
Integrase {ECO:0000313|EMBL:KJC56487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
transposase (IS3 family protein)
PLM3_60_coex_sep16_scaffold_156_19
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24694..25575
DNA (882bp) protein (294aa)
Phosphomannomutase Tax=Oceanibaculum indicum P24 RepID=K2JPM8_9PROT
Phosphomannomutase {ECO:0000313|EMBL:EWY39325.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
phosphomannomutase
PLM3_60_coex_sep16_scaffold_156_20
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25781..26635)
DNA (855bp) protein (285aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI000364D5F3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG05595.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_156_21
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27064..27522
DNA (459bp) protein (153aa)
Glutathione-dependent formaldehyde-activating, GFA Tax=Lutibaculum baratangense AMV1 RepID=V4R344_9RHIZ
Glutathione-dependent formaldehyde-activating, GFA {ECO:0000313|EMBL:ESR26367.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Gfa-like protein
PLM3_60_coex_sep16_scaffold_156_22
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27714..29456
DNA (1743bp) protein (581aa)
cya5; adenylate cyclase (EC:4.6.1.1)
UPI0003CFC54F related cluster Tax=unknown RepID=UPI0003CFC54F
Adenylate cyclase {ECO:0000313|EMBL:ESZ21724.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
PLM3_60_coex_sep16_scaffold_156_23
unknown

Not on your lists

comp(30500..30721)
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_156_trna_1
unknown

Not on your lists

comp(30873..30946)
DNA (74bp)
transferRNA Arg
PLM3_60_coex_sep16_scaffold_156_24
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31119..31706
DNA (588bp) protein (196aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000380BB83
mmeA; Magnetosome membrane associated protein MmeA
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
PLM3_60_coex_sep16_scaffold_156_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31873..32301
DNA (429bp) protein (143aa)
hypothetical protein Tax=Kaistia granuli RepID=UPI00035CAA38
Uncharacterized protein {ECO:0000313|EMBL:KGM36203.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_156_26
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32382..32876
DNA (495bp) protein (165aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010603}; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010679};; Xanthine-guanine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Xanthine phosphoribosyltransferase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7F6_AZOL4
gpt; xanthine phosphoribosyltransferase
PLM3_60_coex_sep16_scaffold_156_27
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(33043..33822)
DNA (780bp) protein (260aa)
MOSC domain containing protein Tax=Gloeocapsa sp. PCC 7428 RepID=K9XIV4_9CHRO
MOSC domain containing protein
MOSC domain containing protein {ECO:0000313|EMBL:AFZ31572.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
PLM3_60_coex_sep16_scaffold_156_28
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33832..34503)
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXE8_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ00972.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM3_60_coex_sep16_scaffold_156_29
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34515..35546)
DNA (1032bp) protein (344aa)
ubiA; 4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.-)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI0003664516
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
Displaying items 1-30 of 34 in total

View Taxonomy