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PLM3_60_coex_sep16_scaffold_519

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_519_1
unknown

Not on your lists

comp(800..1222)
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_519_2
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2344..3483
DNA (1140bp) protein (380aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI00031A4E97
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:KGM86693.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
potD; spermidine/putrescine ABC transporter
PLM3_60_coex_sep16_scaffold_519_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3546..5333
DNA (1788bp) protein (596aa)
Spermidine/putrescine ABC transporter permease Tax=Oceanibaculum indicum P24 RepID=K2JPB6_9PROT
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EKE76397.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_519_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5330..6160
DNA (831bp) protein (277aa)
Lysine-arginine-ornithine-binding periplasmic protein Tax=Microvirga sp. WSM3557 RepID=I4YUI9_9RHIZ
Lysine-arginine-ornithine-binding periplasmic protein {ECO:0000313|EMBL:EIM27631.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative solute-binding component of ABC transporter
PLM3_60_coex_sep16_scaffold_519_5
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6175..6411
DNA (237bp) protein (79aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1YBY7_ANEAE
hypothetical protein
PLM3_60_coex_sep16_scaffold_519_6
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6733..7980)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00038137E6
Uncharacterized protein {ECO:0000313|EMBL:KJS09505.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
amino acid permease-associated protein
PLM3_60_coex_sep16_scaffold_519_7
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8075..10798
DNA (2724bp) protein (908aa)
Acetyltransferase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IV13_RHOCS
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGO34495.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
acetyltransferase
PLM3_60_coex_sep16_scaffold_519_8
bacterium YEK0313, Bacteria

Not on your lists

comp(10893..11435)
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Sphingobium baderi LL03 RepID=T0I7E5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CEJ16003.1}; species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_519_9
unknown

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comp(11701..11880)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_519_10
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11864..13330)
DNA (1467bp) protein (489aa)
Nitrogen fixation protein fixG Tax=Oceanibaculum indicum P24 RepID=K2J6N6_9PROT
fixG; nitrogen fixation protein fixG
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_519_11
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13346..14215)
DNA (870bp) protein (290aa)
Cbb3-type cytochrome c oxidase subunit Tax=Thalassospira profundimaris WP0211 RepID=K2M925_9PROT
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
fixP; cytochrome-c oxidase fixP chain
PLM3_60_coex_sep16_scaffold_519_12
unknown

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comp(14212..14394)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_519_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14405..15130)
DNA (726bp) protein (242aa)
Cb-type cytochrome C oxidase subunit II Tax=Azospirillum sp. (strain B510) RepID=D3NRE5_AZOS1
ccoO; cb-type cytochrome C oxidase subunit II
Cb-type cytochrome C oxidase subunit II {ECO:0000313|EMBL:BAI70974.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3_60_coex_sep16_scaffold_519_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15142..16620)
DNA (1479bp) protein (493aa)
Cbb3-type cytochrome c oxidase subunit I Tax=Oceanibaculum indicum P24 RepID=K2JVY9_9PROT
Peptidase S41 {ECO:0000313|EMBL:KJB94852.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
fixN; Cytochrome c oxidase fixN chain
PLM3_60_coex_sep16_scaffold_519_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16656..16874)
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JTB3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78708.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM3_60_coex_sep16_scaffold_519_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16912..17697)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2K7C7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78709.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
conserved membrane protein of unknown function
PLM3_60_coex_sep16_scaffold_519_17
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17852..19138)
DNA (1287bp) protein (429aa)
NnrS protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IYE5_RHOCS
NnrS protein involved in response to NO {ECO:0000313|EMBL:KIL98778.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
nnrS; NnrS protein
PLM3_60_coex_sep16_scaffold_519_18
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19135..19920)
DNA (786bp) protein (262aa)
Copper-containing nitrite reductase {ECO:0000313|EMBL:ESR23431.1}; EC=1.7.2.1 {ECO:0000313|EMBL:ESR23431.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Copper-containing nitrite reductase Tax=Lutibaculum baratangense AMV1 RepID=V4RBB8_9RHIZ
multicopper oxidase
PLM3_60_coex_sep16_scaffold_519_19
unknown

Not on your lists

comp(20002..20211)
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_519_20
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20387..20833
DNA (447bp) protein (149aa)
Response regulator receiver protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS1_PARL1
Transcriptional regulator {ECO:0000313|EMBL:KJB95334.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
response regulator receiver protein
PLM3_60_coex_sep16_scaffold_519_21
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20836..21465)
DNA (630bp) protein (210aa)
Response regulator receiver protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS2_PARL1
Chemotaxis protein CheY {ECO:0000313|EMBL:KJB95335.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
response regulator receiver protein
PLM3_60_coex_sep16_scaffold_519_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21443..22003)
DNA (561bp) protein (187aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCD01753.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PAS/PAC sensor signal transduction histidine kinase Tax=Azospirillum brasilense Sp245 RepID=G8AUZ4_AZOBR
PAS/PAC sensor signal transduction histidine kinase
PLM3_60_coex_sep16_scaffold_519_23
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22008..22604)
DNA (597bp) protein (199aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Sensor histidine kinase Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX1_AZOL4
Sensor histidine kinase
PLM3_60_coex_sep16_scaffold_519_24
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22744..22875)
DNA (132bp) protein (44aa)
Transposase (Fragment) Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XJM9_9RHOO
transposase
Transposase {ECO:0000313|EMBL:ENO81866.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
Displaying 24 items

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