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PLM3_60_coex_sep16_scaffold_3441

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3441_1

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comp(2..568)
DNA (567bp) protein (189aa)
Conserved hypothetical secreted protein, containing WD40-like beta propeller repeats Tax=uncultured archaeon RepID=D1JC26_9ARCH
Marine sediment metagenome DNA, contig: S01H1_S02258 {ECO:0000313|EMBL:GAF93465.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
WD40 domain-containing protein
PLM3_60_coex_sep16_scaffold_3441_2
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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783..1022
DNA (240bp) protein (80aa)
Probable DNA repair protein Tbis_2990 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y7H7_THEBD
Ku protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_3441_3
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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1042..1446
DNA (405bp) protein (135aa)
Probable DNA repair protein Dred_2003 bin=GWC2_Chloroflexi_73_18 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_3441_4
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1789..2778
DNA (990bp) protein (330aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WAX0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGM02188.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3441_5
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2790..3236)
DNA (447bp) protein (149aa)
Regulatory protein MarR Tax=Frankia sp. (strain EuI1c) RepID=E3J2M3_FRASU
MarR family transcriptional regulator
Regulatory protein MarR {ECO:0000313|EMBL:ADP80537.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_3441_6
unknown

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3301..3825
DNA (525bp) protein (175aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3441_7
Arthrobacter nitrophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3874..4584
DNA (711bp) protein (237aa)
Esterase/lipase Tax=Arthrobacter sp. SJCon RepID=L8TSM7_9MICC
Esterase/lipase {ECO:0000313|EMBL:ELT44259.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
hydrolase or acyltransferase of alpha/beta superfamily
PLM3_60_coex_sep16_scaffold_3441_8
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4680..5414)
DNA (735bp) protein (245aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00037BF5A6
Uncharacterized protein {ECO:0000313|EMBL:KJK12794.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3441_9
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5430..5936)
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Amycolatopsis azurea DSM 43854 RepID=M2PXD1_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EMD24290.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
adenylylsulfate kinase
PLM3_60_coex_sep16_scaffold_3441_10
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5955..6506)
DNA (552bp) protein (184aa)
cellulose 1,4-beta-cellobiosidase (EC:3.2.1.4 3.2.1.91)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (Thermomonospora fusca).;"
Beta-1,4-endoglucanase Tax=Thermobifida fusca RepID=Q08166_THEFU
PLM3_60_coex_sep16_scaffold_3441_11
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6594..7169)
DNA (576bp) protein (192aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003644FC2
Putative uncharacterized protein {ECO:0000313|EMBL:EHB53756.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae JS60.;"
PLM3_60_coex_sep16_scaffold_3441_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7166..8080)
DNA (915bp) protein (305aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003701B09
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AEA25939.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_3441_13
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8130..8294)
DNA (165bp) protein (55aa)
Alpha/beta hydrolase fold protein Tax=Streptomyces fulvissimus DSM 40593 RepID=N0D5T8_9ACTO
Alpha/beta hydrolase fold protein
Uncharacterized protein {ECO:0000313|EMBL:AGK80847.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
PLM3_60_coex_sep16_scaffold_3441_14
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8634..8813)
DNA (180bp) protein (60aa)
Alpha/beta hydrolase fold protein Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GYF7_CELFA
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEE45946.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM3_60_coex_sep16_scaffold_3441_15
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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8854..9276
DNA (423bp) protein (141aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2Q087_KRIFD
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADB31879.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM3_60_coex_sep16_scaffold_3441_16
Mycobacterium immunogenum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9810..10037
DNA (228bp) protein (76aa)
hypothetical protein Tax=Kocuria atrinae RepID=UPI0002D9472A
Um strain SMUC14 PROKKA_contig000006, whole genome shotgun sequence {ECO:0000313|EMBL:KIU41030.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium immunogenum.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3441_17
unknown

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10034..10285
DNA (252bp) protein (84aa)
hypothetical protein Tax=Kocuria atrinae RepID=UPI0003090BE9
Displaying 17 items

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