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PLM3_60_coex_sep16_scaffold_10479

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_10479_1
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..194
DNA (192bp) protein (64aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI000380C9A8
ATPase associated with various cellular activities, AAA_5 {ECO:0000313|EMBL:CCH77965.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
ATPase
PLM3_60_coex_sep16_scaffold_10479_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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175..1341
DNA (1167bp) protein (389aa)
VWA containing CoxE-like protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZT4_RUBXD
VWA containing CoxE-like protein
VWA containing CoxE-like protein {ECO:0000313|EMBL:ABG03094.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_10479_3
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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1352..2626
DNA (1275bp) protein (425aa)
tryptophan 2,3-dioxygenase (EC:1.13.11.11)
Tryptophan 2,3-dioxygenase {ECO:0000255|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000255|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000255|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000255|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000255|HAMAP-Rule:MF_01972}; Short=TO {ECO:0000255|HAMAP-Rule:MF_01972};; Short=TRPO {ECO:0000255|HAMAP-Rule:MF_01972};; Tryptophan pyrrolase {ECO:0000255|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000255|HAMAP-Rule:MF_01972}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000375DF2E
PLM3_60_coex_sep16_scaffold_10479_4
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2531..3760)
DNA (1230bp) protein (410aa)
Uncharacterized protein Tax=Paenibacillus mucilaginosus RepID=H6NEC5_9BACL
bacteriocin-protection protein, YdeI/OmpD-associated family
Bacteriocin-protection protein, YdeI/OmpD-associated family {ECO:0000313|EMBL:AFH66233.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
PLM3_60_coex_sep16_scaffold_10479_5
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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3840..4220
DNA (381bp) protein (127aa)
ACT domain-containing protein bin=bin9_gal15 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
ACT domain-containing protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_10479_6
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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4294..4677
DNA (384bp) protein (128aa)
ACT domain-containing protein bin=bin9_gal15 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
ACT domain-containing protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_10479_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(4659..6002)
DNA (1344bp) protein (448aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_10479_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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6070..7236
DNA (1167bp) protein (389aa)
kynurenine--oxoglutarate transaminase (EC:2.6.1.7)
Kynurenine--oxoglutarate transaminase Tax=Frankia sp. CN3 RepID=G6HP70_9ACTO
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7244..8191)
DNA (948bp) protein (316aa)
Putative FAD-linked oxidoreductase {ECO:0000313|EMBL:EXI87610.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI87610.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037FE478
glcE; glycolate oxidase, subunit glcE
PLM3_60_coex_sep16_scaffold_10479_10
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

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comp(8182..9645)
DNA (1464bp) protein (488aa)
Putative oxidase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A2H5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KIE49838.1}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
putative oxidase
PLM3_60_coex_sep16_scaffold_10479_11
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9668..10024
DNA (357bp) protein (119aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U680_9CHLR
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:EWS99752.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_10479_12
Streptomyces toyocaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10029..10373)
DNA (345bp) protein (115aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI00036C7120
Sulfurtransferase {ECO:0000313|EMBL:KES04324.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces toyocaensis.;"
rhodanese domain-containing protein
PLM3_60_coex_sep16_scaffold_10479_13
Gordonia bronchialis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10390..10779)
DNA (390bp) protein (130aa)
Appr-1-p processing domain protein Tax=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) RepID=D0LCW1_GORB4
Appr-1-p processing protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:ACY22454.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC; 10667) (Rhodococcus bronchialis).;"
PLM3_60_coex_sep16_scaffold_10479_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10943..11878
DNA (936bp) protein (312aa)
PfkB domain protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2R7_CONWI
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ADB54198.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_10479_15
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

11875..12369
DNA (495bp) protein (165aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI000373C362
hypothetical protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_60_coex_sep16_scaffold_10479_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

12393..13637
DNA (1245bp) protein (415aa)
MFS transporter Tax=Kurthia massiliensis RepID=UPI0002895D7F
major facilitator superfamily transporter
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

13715..13948
DNA (234bp) protein (78aa)
Transcriptional regulator, AsnC family Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AB39_THECD
AsnC family transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_18
unknown

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comp(14324..14449)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_10479_19
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14492..15160
DNA (669bp) protein (223aa)
Putative metal-dependent membrane protease Tax=Streptomyces sp. SM8 RepID=K1V042_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCI53696.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
Integral membrane protein
PLM3_60_coex_sep16_scaffold_10479_20

Not on your lists

15157..15774
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL76951.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_coex_sep16_scaffold_10479_21
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15877..16356
DNA (480bp) protein (160aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DDF9_MYXXD
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_22
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(16476..17966)
DNA (1491bp) protein (497aa)
hypothetical protein Tax=Streptomyces sp. AA1529 RepID=UPI0003667913
glycosyl transferase 39
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_23
unknown

Not on your lists

comp(18007..18126)
DNA (120bp) protein (40aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_10479_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18424..19251
DNA (828bp) protein (276aa)
Ribosomal RNA small subunit methyltransferase I Tax=Streptomyces ghanaensis ATCC 14672 RepID=D5ZWI7_9ACTO
SCE87.04c; hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


19272..20810
DNA (1539bp) protein (513aa)
Methionine--tRNA ligase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y8C9_THEBD
methionyl-tRNA synthetase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_26
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

20957..21763
DNA (807bp) protein (269aa)
hydrolase TatD
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_10479_27
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

21898..22218
DNA (321bp) protein (107aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI00035C655C
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 27 items

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