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PLM3_60_coex_sep16_scaffold_5742

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5742_1
unknown

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2..127
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5742_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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129..1070
DNA (942bp) protein (314aa)
UDP-glucuronate decarboxylase {ECO:0000313|EMBL:AEN73727.1}; EC=4.1.1.35 {ECO:0000313|EMBL:AEN73727.1};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
NAD-dependent epimerase/dehydratase Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJT3_RHOM4
NAD-dependent epimerase/dehydratase
PLM3_60_coex_sep16_scaffold_5742_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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1067..1909
DNA (843bp) protein (281aa)
hydrolase Tax=Actinomadura flavalba RepID=UPI00036489DB
HAD-superfamily subfamily IB hydrolase
Hydrolase {ECO:0000313|EMBL:ETK34488.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM3_60_coex_sep16_scaffold_5742_4
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(1906..2403)
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LBX2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH21319.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_5742_5
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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2571..3731
DNA (1161bp) protein (387aa)
Putative oxidoreductase {ECO:0000313|EMBL:KJF16260.1}; EC=1.-.-.- {ECO:0000313|EMBL:KJF16260.1};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
IMP dehydrogenase family protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M333_ACIFD
inosine 5-monophosphate dehydrogenase
PLM3_60_coex_sep16_scaffold_5742_6
unknown

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comp(3738..3971)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5742_7
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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4140..5597
DNA (1458bp) protein (486aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000255|HAMAP-Rule:MF_00344}; EC=6.3.5.2 {ECO:0000255|HAMAP-Rule:MF_00344};; GMP synthetase {ECO:0000255|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000255|HAMAP-Rule:MF_00344}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
GMP synthase [glutamine-hydrolyzing] Tax=Frankia sp. (strain EAN1pec) RepID=GUAA_FRASN
guaA; GMP synthase
PLM3_60_coex_sep16_scaffold_5742_8
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6051..6587)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Mycobacterium canettii CIPT 140070017 RepID=L0QWJ6_9MYCO
lppC; lipoprotein
Phosphatidylethanolamine-binding protein {ECO:0000313|EMBL:AGL27359.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis CAS/NITR204.;"
PLM3_60_coex_sep16_scaffold_5742_9
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6595..7506)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Streptomyces sp. CNQ766 RepID=UPI0003679625
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:AKH81881.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
oxidoreductase
PLM3_60_coex_sep16_scaffold_5742_10
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(7488..7949)
DNA (462bp) protein (154aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002629081
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3_60_coex_sep16_scaffold_5742_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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8054..9376
DNA (1323bp) protein (441aa)
Nodulation efficiency protein NfeD bin=GWA2_Ignavibacteria_55_11 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative protease/transporter
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5742_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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9378..10271
DNA (894bp) protein (298aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5742_13
Oenococcus kitaharae, Oenococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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10320..10544
DNA (225bp) protein (75aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Oenococcus.;" source="Oenococcus kitaharae DSM 17330.;"
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase Tax=Oenococcus kitaharae DSM 17330 RepID=G9WIE0_9LACT
Displaying 13 items

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