ggKbase home page

PLM3_60_coex_sep16_scaffold_2793

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2793_1
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..2679
DNA (2679bp) protein (893aa)
Integral membrane sensor signal transduction histidine kinase Tax=Frankia sp. CN3 RepID=G6HDQ1_9ACTO
sensor with HAMP domain
Putative sensor with HAMP domain {ECO:0000313|EMBL:ADP82752.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_2793_2
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2663..3085
DNA (423bp) protein (141aa)
Roadblock/LC7 family protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AUX4_FRADG
Roadblock/LC7 family protein
Roadblock/LC7 family protein {ECO:0000313|EMBL:AEH11177.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_2793_3
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3110..3481
DNA (372bp) protein (124aa)
Putative uncharacterized protein Tax=Frankia sp. (strain CcI3) RepID=Q2J926_FRASC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETA02514.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
PLM3_60_coex_sep16_scaffold_2793_4
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3462..4106
DNA (645bp) protein (215aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QFB1_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU76688.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM3_60_coex_sep16_scaffold_2793_5
Geomicrobium sp. JCM 19037, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4122..5201)
DNA (1080bp) protein (360aa)
Uncharacterized protein Tax=Lutibaculum baratangense AMV1 RepID=V4T7U9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAK05125.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19037.;"
putative lipoprotein
PLM3_60_coex_sep16_scaffold_2793_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5651..7846)
DNA (2196bp) protein (732aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 Tax=Frankia alni (strain ACN14a) RepID=Q0RB35_FRAAA
PLM3_60_coex_sep16_scaffold_2793_7
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7839..8501)
DNA (663bp) protein (221aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LCI6_FRASN
PLM3_60_coex_sep16_scaffold_2793_8
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8713..9546)
DNA (834bp) protein (278aa)
Penicillin-binding protein, beta-lactamase class C Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BHX5_SANKS
penicillin-binding protein
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:ACZ22045.1}; species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
PLM3_60_coex_sep16_scaffold_2793_9
unknown

Not on your lists

comp(9632..10423)
DNA (792bp) protein (264aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2793_10
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10438..10677)
DNA (240bp) protein (80aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
Phosphoribosylformylglycinamidine synthase, purS protein Tax=Streptomyces sp. HPH0547 RepID=S3AX43_9ACTO
phosphoribosylformylglycinamidine synthase, purS protein
PLM3_60_coex_sep16_scaffold_2793_11
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11338..11616
DNA (279bp) protein (93aa)
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWJ4_ACIC1
RNA polymerase subunit sigma 28
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:ABK53804.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_2793_12
unknown

Not on your lists

11763..12017
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2793_13
Streptomyces filamentosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12059..13354)
DNA (1296bp) protein (432aa)
DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
DNA (Cytosine-5-)-methyltransferase Tax=Streptomyces RepID=D6ACP2_STRFL
Uncharacterized protein {ECO:0000313|EMBL:EWS93609.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseosporus NRRL 11379.;"
PLM3_60_coex_sep16_scaffold_2793_14
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13576..13833
DNA (258bp) protein (86aa)
Flagellar protein FlbD Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WE92_9ACTO
flbD; flagellar protein FlbD
Flagellar protein FlbD {ECO:0000313|EMBL:AGZ46350.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_60_coex_sep16_scaffold_2793_15
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13844..15037)
DNA (1194bp) protein (398aa)
ABC transporter permease Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDZ7_9ACTO
ABC transporter permease {ECO:0000313|EMBL:CCH22044.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
ABC transporter
PLM3_60_coex_sep16_scaffold_2793_16
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15034..15741)
DNA (708bp) protein (236aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI0003681898
Uncharacterized protein {ECO:0000313|EMBL:ETK32213.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
ABC transporter
PLM3_60_coex_sep16_scaffold_2793_17
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15738..16937)
DNA (1200bp) protein (400aa)
Peptidoglycan-binding protein Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2XZ29_9PSEU
Peptidoglycan-binding protein {ECO:0000313|EMBL:KFZ76777.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
Conserved putative secreted protein
PLM3_60_coex_sep16_scaffold_2793_18
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16934..17557)
DNA (624bp) protein (208aa)
hypothetical protein Tax=Amycolatopsis balhimycina RepID=UPI0003713822
Uncharacterized protein {ECO:0000313|EMBL:ETK35540.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2793_19
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17721..18374
DNA (654bp) protein (218aa)
transcriptional regulator Tax=Actinomadura atramentaria RepID=UPI00035FC304
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADG89008.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_2793_20
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18380..19585
DNA (1206bp) protein (402aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036D97E4
histidine kinase
PLM3_60_coex_sep16_scaffold_2793_21
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19596..20459)
DNA (864bp) protein (288aa)
hypothetical protein Tax=Streptomyces RepID=UPI0003771941
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI02139.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_2793_22
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20518..20808
DNA (291bp) protein (97aa)
transposase Tax=Salinispora arenicola RepID=UPI00036F3D11
ISMsm2, transposase {ECO:0000313|EMBL:CDO21052.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
transposase
Displaying 22 items

View Taxonomy