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PLM3_60_coex_sep16_scaffold_269

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_269_1
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..999
DNA (999bp) protein (333aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00038122A1
transcriptional regulator, luxR family
Transcriptional regulator, luxR family {ECO:0000313|EMBL:AGB24598.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
PLM3_60_coex_sep16_scaffold_269_2
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1281..2114
DNA (834bp) protein (278aa)
Chloride peroxidase Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JMY2_STRHJ
chloride peroxidase
Chloride peroxidase {ECO:0000313|EMBL:AEY85831.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
PLM3_60_coex_sep16_scaffold_269_3
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2162..3136
DNA (975bp) protein (325aa)
Uncharacterized protein Tax=Saccharopolyspora erythraea RepID=A4FH21_SACEN
Uncharacterized protein {ECO:0000313|EMBL:KJS62447.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_269_4
unknown

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comp(3133..3396)
DNA (264bp) protein (88aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI00037EBA76
PLM3_60_coex_sep16_scaffold_269_5
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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3632..5074
DNA (1443bp) protein (481aa)
DUF1254 multi-domain protein Tax=Streptomyces fulvissimus DSM 40593 RepID=N0CMS0_9ACTO
DUF1254 multi-domain protein
Uncharacterized protein {ECO:0000313|EMBL:AGK76895.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
PLM3_60_coex_sep16_scaffold_269_6
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5175..5633
DNA (459bp) protein (153aa)
hypothetical protein Tax=Frankia sp. Iso899 RepID=UPI0003B42052
Uncharacterized protein {ECO:0000313|EMBL:KFF60040.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_269_7
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6382..7593
DNA (1212bp) protein (404aa)
Uncharacterized protein Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BRG3_XYLCX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ30418.1}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
PLM3_60_coex_sep16_scaffold_269_8
Mycobacterium farcinogenes, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(7999..9846)
DNA (1848bp) protein (616aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00037D4836
Sulfate ABC transporter {ECO:0000313|EMBL:CDP85788.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium farcinogenes.;"
sulfate transporter
PLM3_60_coex_sep16_scaffold_269_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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10438..11730
DNA (1293bp) protein (431aa)
sodium:proton antiporter Tax=Rhodococcus sp. DK17 RepID=UPI0002EC15A2
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ADB49042.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_269_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12064..14436
DNA (2373bp) protein (791aa)
Putative arylsulfatase atsD {ECO:0000313|EMBL:CCV14376.1}; EC=3.1.6.1 {ECO:0000313|EMBL:CCV14376.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
atsD; Putative arylsulfatase AtsD (aryl-sulfate sulphohydrolase) (arylsulphatase) (EC:3.1.6.1)
hypothetical protein Tax=Microbacterium yannicii RepID=UPI00036E54B6
PLM3_60_coex_sep16_scaffold_269_11
unknown

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comp(14699..15127)
DNA (429bp) protein (143aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_269_12

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15573..16220
DNA (648bp) protein (216aa)
Conserved protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVS3_METMA
Marine sediment metagenome DNA, contig: S01H1_S20101 {ECO:0000313|EMBL:GAG26807.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_269_13
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16234..16623)
DNA (390bp) protein (130aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035CC401
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ23576.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_60_coex_sep16_scaffold_269_14
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16688..17974)
DNA (1287bp) protein (429aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036F9E61
Membrane protein {ECO:0000313|EMBL:EWT01619.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
integral membrane protein
PLM3_60_coex_sep16_scaffold_269_15
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18149..18448)
DNA (300bp) protein (100aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003787A99
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL90197.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM3_60_coex_sep16_scaffold_269_16
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19306..20169
DNA (864bp) protein (288aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2PEK4_9ACTO
iron-sulfur protein
Putative iron-sulfur protein {ECO:0000313|EMBL:AEW97398.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM3_60_coex_sep16_scaffold_269_17
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20361..21335)
DNA (975bp) protein (325aa)
Alcohol dehydrogenase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AY90_STRRD
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:ACZ87100.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_269_18
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21550..22563)
DNA (1014bp) protein (338aa)
Aldo/keto reductase Tax=Streptomyces viridochromogenes DSM 40736 RepID=D9X2F5_STRVR
Voltage-gated potassium channel {ECO:0000313|EMBL:KDN72490.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
aldo/keto reductase
PLM3_60_coex_sep16_scaffold_269_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22671..23885)
DNA (1215bp) protein (405aa)
Family 3 adenylate cyclase Tax=Rhizobium sp. CF122 RepID=J2IIS8_9RHIZ
Family 3 adenylate cyclase {ECO:0000313|EMBL:EJL48578.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
adenylate/guanylate cyclase
PLM3_60_coex_sep16_scaffold_269_20
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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comp(24077..25195)
DNA (1119bp) protein (373aa)
transposase family protein
Tax=RBG_13_Chloroflexi_46_14_curated
PLM3_60_coex_sep16_scaffold_269_21
unknown

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comp(25326..25688)
DNA (363bp) protein (121aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_269_22
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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26066..26455
DNA (390bp) protein (130aa)
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_60_coex_sep16_scaffold_269_23
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26493..26894)
DNA (402bp) protein (134aa)
Nucleic acid-binding protein contains PIN domain-like Tax=Frankia sp. (strain CcI3) RepID=Q2J9R3_FRASC
nucleic acid binding protein
Putative nucleic acid-binding protein {ECO:0000313|EMBL:ETA01879.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
PLM3_60_coex_sep16_scaffold_269_24
unknown

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comp(27379..27537)
DNA (159bp) protein (53aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_269_25
unknown

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27820..28014
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_269_26
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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28416..28850
DNA (435bp) protein (145aa)
Transcriptional regulator WhiB Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LYH1_ACIFD
transcription factor WhiB
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_269_27
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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28840..29769
DNA (930bp) protein (310aa)
Type IV secretory pathway VirD4 components-like Tax=Frankia sp. (strain CcI3) RepID=Q2J7T0_FRASC
Type IV secretory pathway VirD4 components-like protein
Type IV secretory pathway VirD4 components-like {ECO:0000313|EMBL:ABD12662.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
Displaying 27 items

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