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PLM3_60_coex_sep16_scaffold_338

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_338_1
Thermodesulfobacterium geofontis, Thermodesulfobacterium, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(2..142)
DNA (141bp) protein (47aa)
Aconitate hydratase Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C534_THEGP
aconitate hydratase
Aconitate hydratase {ECO:0000313|EMBL:AEH23664.1}; species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfobacterium.;" source="Thermodesulfobacterium geofontis (strain OPF15).;"
PLM3_60_coex_sep16_scaffold_338_2
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(178..885)
DNA (708bp) protein (236aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyl/phenylalanyl-tRNA--protein transferase; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
leucyl/phenylalanyl-tRNA/protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase Tax=Frankia sp. QA3 RepID=I8QZ64_9ACTO
PLM3_60_coex_sep16_scaffold_338_3
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1065..2480
DNA (1416bp) protein (472aa)
Uncharacterized protein Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X7S5_ACISM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW71509.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM3_60_coex_sep16_scaffold_338_4
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2898..3494
DNA (597bp) protein (199aa)
Molybdopterin dehydrogenase FAD-binding protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LFU5_HALO1
FAD-binding molybdopterin dehydrogenase protein
Molybdopterin dehydrogenase FAD-binding protein {ECO:0000313|EMBL:ACY14547.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_60_coex_sep16_scaffold_338_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3494..4033
DNA (540bp) protein (180aa)
Carbon monoxide dehydrogenase, small subunit Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SD89_NOCSJ
2Fe-2S iron-sulfur cluster binding domain-containing protein
Carbon monoxide dehydrogenase, small subunit {ECO:0000313|EMBL:ABL79774.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_338_6
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4030..6222
DNA (2193bp) protein (731aa)
Carbon-monoxide dehydrogenase, large subunit Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LFU3_HALO1
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:ACY14545.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
carbon-monoxide dehydrogenase, large subunit
PLM3_60_coex_sep16_scaffold_338_7
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6219..7160
DNA (942bp) protein (314aa)
YHS domain-containing protein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGE9_THEM7
YHS domain-containing protein
YHS domain-containing protein {ECO:0000313|EMBL:ADU51601.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM3_60_coex_sep16_scaffold_338_8
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7181..7780
DNA (600bp) protein (200aa)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI0003681D1C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW16273.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_338_9
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7803..9017)
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HAL7_ACTM4
Uncharacterized protein {ECO:0000313|EMBL:CCH78810.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_338_10
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9037..9777)
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WB13_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ45121.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_60_coex_sep16_scaffold_338_11
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9815..10903)
DNA (1089bp) protein (363aa)
Putative esterase Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HAL6_ACTM4
Ferric enterobactin esterase-related protein {ECO:0000313|EMBL:CEL20562.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
putative esterase
PLM3_60_coex_sep16_scaffold_338_12
unknown

Not on your lists

10932..11888
DNA (957bp) protein (319aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_338_13
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(11941..12501)
DNA (561bp) protein (187aa)
Deaminase-reductase domain-containing protein Tax=Rhodococcus opacus M213 RepID=K8X8I2_RHOOP
deaminase-reductase domain-containing protein
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3_60_coex_sep16_scaffold_338_14
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12712..13071
DNA (360bp) protein (120aa)
Putative uncharacterized protein Tax=Streptomyces sp. AA4 RepID=D9VCM8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KDN20217.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_338_15
Micromonospora echinospora, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13047..13604)
DNA (558bp) protein (186aa)
CalU16 Tax=Micromonospora echinospora RepID=Q8KNE9_MICEC
CalU16 {ECO:0000313|EMBL:AAM70339.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora echinospora (Micromonospora purpurea).;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_338_16
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13601..13963)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Amycolatopsis alba RepID=UPI00037C1426
Hypothetical protein
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFZ77913.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
PLM3_60_coex_sep16_scaffold_338_17
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14043..16619
DNA (2577bp) protein (859aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003645FF2
LuxR family transcriptional regulator {ECO:0000313|EMBL:KKD08879.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
putative LuxR-family transcriptional regulator
PLM3_60_coex_sep16_scaffold_338_18
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16692..17255
DNA (564bp) protein (188aa)
Putative acetyltransferase Tax=Mesorhizobium sp. STM 4661 RepID=M5FFG1_9RHIZ
Putative acetyltransferase {ECO:0000313|EMBL:CCV15055.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Acetyltransferase
PLM3_60_coex_sep16_scaffold_338_19
Streptomyces sp. HCCB10043, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17287..17709
DNA (423bp) protein (141aa)
Cupin domain-containing protein Tax=Streptomyces RepID=D6AEN2_STRFL
Cupin 2 domain-containing protein {ECO:0000313|EMBL:ESU47954.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HCCB10043.;"
cupin
PLM3_60_coex_sep16_scaffold_338_20
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..18155
DNA (429bp) protein (143aa)
Putative uncharacterized protein Tax=Burkholderia xenovorans (strain LB400) RepID=Q13PU4_BURXL
Uncharacterized protein {ECO:0000313|EMBL:KDR36985.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_338_21
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(18177..20915)
DNA (2739bp) protein (913aa)
Adenylate/guanylate cyclase bin=GWC2_Chloroflexi_73_18 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Predicted ATPase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_338_22
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21258..22475)
DNA (1218bp) protein (406aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (EC:2.3.1.12)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137, ECO:0000313|EMBL:CAM04860.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase Tax=Saccharopolyspora erythraea RepID=A4FLD5_SACEN
PLM3_60_coex_sep16_scaffold_338_23
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22491..23492)
DNA (1002bp) protein (334aa)
Transketolase, central region Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSF2_ACIC1
transketolase, central region
Transketolase, central region {ECO:0000313|EMBL:ABK52362.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_338_24
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23492..24571)
DNA (1080bp) protein (360aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1)
Pyruvate dehydrogenase (Lipoamide) Tax=Thermobifida fusca (strain YX) RepID=Q47KE0_THEFY
PLM3_60_coex_sep16_scaffold_338_25
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24609..25076)
DNA (468bp) protein (156aa)
Putative signal-transduction protein with CBS domains Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSF4_ACIC1
signal-transduction protein
Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABK52364.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_338_26
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25098..26606)
DNA (1509bp) protein (503aa)
pdhD; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:CAM04863.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Dihydrolipoyl dehydrogenase Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FLD8_SACEN
PLM3_60_coex_sep16_scaffold_338_27
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26805..27038
DNA (234bp) protein (78aa)
Transcriptional regulator, AsnC family Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XF00_NAKMY
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ACV77886.1}; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_60_coex_sep16_scaffold_338_28
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(27059..27421)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYC0_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3_60_coex_sep16_scaffold_338_29
unknown

Not on your lists

comp(27502..27867)
DNA (366bp) protein (122aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_338_30
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28032..28787
DNA (756bp) protein (252aa)
Aminotransferase class IV Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JS64_SACES
Uncharacterized protein {ECO:0000313|EMBL:ETK34144.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
Aminotransferase class IV
Displaying items 1-30 of 42 in total

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