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PLM3_30_b1_sep16_scaffold_578

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Displaying items 1-30 of 58 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_30_b1_sep16_scaffold_578_1
unknown

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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254..646
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBV5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58766.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_578_3
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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721..1671
DNA (951bp) protein (317aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9M5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15473.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_578_4
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(1870..2178)
DNA (309bp) protein (103aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702E2_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28682.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_578_5
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(2490..3536)
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Nitrosopumilus RepID=UPI00035D0775
conserved membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AJW70835.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3_30_b1_sep16_scaffold_578_6
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

3754..4044
DNA (291bp) protein (97aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702E1_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28683.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_578_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4193..4399
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILP4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15620.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3_30_b1_sep16_scaffold_578_8
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(4547..5326)
DNA (780bp) protein (260aa)
Putative ABC transporter permease protein Tax=uncultured crenarchaeote RepID=Q702C6_9CREN
Putative ABC transporter permease protein {ECO:0000313|EMBL:CAF28698.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
ABC efflux transporter permease
PLM3_30_b1_sep16_scaffold_578_9
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(5304..6269)
DNA (966bp) protein (322aa)
Putative ABC transporter ATP binding protein Tax=uncultured crenarchaeote RepID=Q702C7_9CREN
Putative ABC transporter ATP binding protein {ECO:0000313|EMBL:CAF28697.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
ABC efflux transporter, ATP-binding protein
PLM3_30_b1_sep16_scaffold_578_10
unknown

Not on your lists

comp(6319..7602)
DNA (1284bp) protein (428aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_11
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

8152..8562
DNA (411bp) protein (137aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702D0_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28694.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
putative Mov34/MPN/PAD-1 family protein
PLM3_30_b1_sep16_scaffold_578_12
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

8612..8932
DNA (321bp) protein (107aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702D1_9CREN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28693.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_578_13
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8980..10620)
DNA (1641bp) protein (547aa)
PKD domain protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09E43_STIAD
peptidase, m36 (fungalysin) family
PKD domain protein {ECO:0000313|EMBL:EAU69980.1}; Peptidase, M36 (Fungalysin) family {ECO:0000313|EMBL:ADO74746.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM3_30_b1_sep16_scaffold_578_14
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(10983..11822)
DNA (840bp) protein (280aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
Putative type II DNA modification methylase Tax=uncultured crenarchaeote RepID=Q702D2_9CREN
DNA methylase N-4/N-6 domain-containing protein
PLM3_30_b1_sep16_scaffold_578_15
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(12493..13560)
DNA (1068bp) protein (356aa)
3-dehydroquinate synthase II (EC:1.4.1.-)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702D3_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28691.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3_30_b1_sep16_scaffold_578_16
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(13541..14335)
DNA (795bp) protein (265aa)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADTH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; EC=2.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00960};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
aroGFH; 3-deoxy-7-phosphoheptulonate synthase (EC:4.1.2.13 2.5.1.54)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Tax=uncultured crenarchaeote RepID=Q702D4_9CREN
PLM3_30_b1_sep16_scaffold_578_17
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

comp(14525..14872)
DNA (348bp) protein (116aa)
Putative nitrogen regulatory protein P II Tax=uncultured crenarchaeote RepID=Q702D5_9CREN
Putative nitrogen regulatory protein P II {ECO:0000313|EMBL:CAF28689.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
nitrogen regulatory protein P-II
PLM3_30_b1_sep16_scaffold_578_18
unknown

Not on your lists

comp(15266..15931)
DNA (666bp) protein (222aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(16362..16994)
DNA (633bp) protein (211aa)
CBS and Zinc Finger C2H2 domain-containing membrane protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILW0_NITGG
CBS and Zinc Finger C2H2 domain-containing membrane protein
CBS and Zinc Finger C2H2 domain-containing membrane protein {ECO:0000313|EMBL:AFU57394.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_578_20
unknown

Not on your lists

17089..17460
DNA (372bp) protein (124aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_21
unknown

Not on your lists

comp(17614..18195)
DNA (582bp) protein (194aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_22
unknown

Not on your lists

comp(18501..18770)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_30_b1_sep16_scaffold_578_trna_1
unknown

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18957..19031
DNA (75bp)
transferRNA Met
PLM3_30_b1_sep16_scaffold_578_23
CG_Falkow_04, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19152..19742
DNA (591bp) protein (197aa)
Uncharacterized membrane-associated protein Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D0T2_PELTS
DedA; hypothetical protein
Tax=CG_Falkow_04
PLM3_30_b1_sep16_scaffold_578_24
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists

19861..20379
DNA (519bp) protein (173aa)
phosphodiesterase family protein (EC:3.1.-.-)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
hypothetical protein Tax=Gracilimonas tropica RepID=UPI0003776B4E
PLM3_30_b1_sep16_scaffold_578_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(20449..20829)
DNA (381bp) protein (127aa)
Translation initiation factor 5A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INM0_NITGG
eIF-5A; translation initiation factor 5A
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_00085}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_578_26

Not on your lists

comp(20899..21471)
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKJ7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AFK24857.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
PLM3_30_b1_sep16_scaffold_578_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21608..22483)
DNA (876bp) protein (292aa)
Putative glycosyl transferase, family 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE13_NITGG
glycosyl transferase, family 2
Putative glycosyl transferase, family 2 {ECO:0000313|EMBL:AFU59606.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3_30_b1_sep16_scaffold_578_28

Not on your lists

22613..23539
DNA (927bp) protein (309aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase Tax=uncultured archaeon RepID=I3RKJ4_9ARCH
PLM3_30_b1_sep16_scaffold_578_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(23596..23973)
DNA (378bp) protein (126aa)
30S ribosomal protein S8e Tax=Candidatus Nitrososphaera gargensis RepID=K0IMZ0_NITGG
rps8e; 30S ribosomal protein S8e
R-protein S8e {ECO:0000313|EMBL:ADK26004.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
Displaying items 1-30 of 58 in total

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